This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ###################################################################### | |
| ### Center multi-unit protein in pbc box with VMD | |
| ### Make sure you are in first frame of MD | |
| ###################################################################### | |
| # Join separate units for this first frame only | |
| pbc join connected -now | |
| pbc join residue -now | |
| # Join the protein for all MD |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| """ | |
| Experimental wrapper to use Chimera's Python directly from console. | |
| You can `import chimera` with no errors! | |
| Usage | |
| ===== | |
| 1. Alias your /path/to/chimera/bin/python binary to something more user-friendly, like `chimerapy`. | |
| 2. Download these two files and put them together | |
| 3. Run `chimerapy -i chimera_cli.py`. (Tip: Realias `chimerapy` to this command). |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Place this file inside your ~/.idlerc/ folder | |
| # or paste its contents inside | |
| # /path/to/python/idlelib/config-highlight.def | |
| # Adapted from SublimeText's Monokai | |
| [monokai] | |
| normal-foreground= #F8F8F2 | |
| normal-background= #272822 | |
| keyword-foreground= #F92672 | |
| keyword-background= #272822 |
NewerOlder