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Checking that xarray computes the correct cumulative sum on chunked core dimensions
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{ | |
"cells": [ | |
{ | |
"cell_type": "code", | |
"execution_count": 11, | |
"id": "89794732-fcea-4d4b-80f8-0b055da6374a", | |
"metadata": {}, | |
"outputs": [], | |
"source": [ | |
"import xarray as xr" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 12, | |
"id": "20978aa6-24d0-4875-8236-f142c68637d1", | |
"metadata": {}, | |
"outputs": [ | |
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" *\n", | |
" */\n", | |
"\n", | |
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" --xr-font-color0: var(--jp-content-font-color0, rgba(0, 0, 0, 1));\n", | |
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" --xr-border-color: var(--jp-border-color2, #e0e0e0);\n", | |
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"body.vscode-dark {\n", | |
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".xr-wrap {\n", | |
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"\n", | |
".xr-text-repr-fallback {\n", | |
" /* fallback to plain text repr when CSS is not injected (untrusted notebook) */\n", | |
" display: none;\n", | |
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"\n", | |
".xr-header {\n", | |
" padding-top: 6px;\n", | |
" padding-bottom: 6px;\n", | |
" margin-bottom: 4px;\n", | |
" border-bottom: solid 1px var(--xr-border-color);\n", | |
"}\n", | |
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".xr-header > div,\n", | |
".xr-header > ul {\n", | |
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"\n", | |
".xr-obj-type,\n", | |
".xr-array-name {\n", | |
" margin-left: 2px;\n", | |
" margin-right: 10px;\n", | |
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".xr-obj-type {\n", | |
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".xr-sections {\n", | |
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" grid-template-columns: 150px auto auto 1fr 20px 20px;\n", | |
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".xr-section-item {\n", | |
" display: contents;\n", | |
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".xr-section-item input {\n", | |
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"\n", | |
".xr-section-item input + label {\n", | |
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".xr-section-item input:enabled + label {\n", | |
" cursor: pointer;\n", | |
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".xr-section-item input:enabled + label:hover {\n", | |
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".xr-section-summary {\n", | |
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".xr-section-summary-in + label:before {\n", | |
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" content: '▼';\n", | |
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".xr-section-summary,\n", | |
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".xr-section-summary-in:checked ~ .xr-section-details {\n", | |
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" grid-template-columns: 20px auto;\n", | |
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"\n", | |
".xr-array-wrap > label {\n", | |
" grid-column: 1;\n", | |
" vertical-align: top;\n", | |
"}\n", | |
"\n", | |
".xr-preview {\n", | |
" color: var(--xr-font-color3);\n", | |
"}\n", | |
"\n", | |
".xr-array-preview,\n", | |
".xr-array-data {\n", | |
" padding: 0 5px !important;\n", | |
" grid-column: 2;\n", | |
"}\n", | |
"\n", | |
".xr-array-data,\n", | |
".xr-array-in:checked ~ .xr-array-preview {\n", | |
" display: none;\n", | |
"}\n", | |
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".xr-array-in:checked ~ .xr-array-data,\n", | |
".xr-array-preview {\n", | |
" display: inline-block;\n", | |
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"\n", | |
".xr-dim-list {\n", | |
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" list-style: none;\n", | |
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"\n", | |
".xr-dim-list li {\n", | |
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".xr-dim-list:before {\n", | |
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".xr-var-list,\n", | |
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"\n", | |
".xr-var-item > div,\n", | |
".xr-var-item label,\n", | |
".xr-var-item > .xr-var-name span {\n", | |
" background-color: var(--xr-background-color-row-even);\n", | |
" margin-bottom: 0;\n", | |
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"\n", | |
".xr-var-item > .xr-var-name:hover span {\n", | |
" padding-right: 5px;\n", | |
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"\n", | |
".xr-var-list > li:nth-child(odd) > div,\n", | |
".xr-var-list > li:nth-child(odd) > label,\n", | |
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n", | |
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".xr-var-name {\n", | |
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".xr-var-dtype {\n", | |
" grid-column: 3;\n", | |
" text-align: right;\n", | |
" color: var(--xr-font-color2);\n", | |
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"\n", | |
".xr-var-preview {\n", | |
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"\n", | |
".xr-var-name,\n", | |
".xr-var-dims,\n", | |
".xr-var-dtype,\n", | |
".xr-preview,\n", | |
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" white-space: nowrap;\n", | |
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" text-overflow: ellipsis;\n", | |
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"}\n", | |
"\n", | |
".xr-var-name:hover,\n", | |
".xr-var-dims:hover,\n", | |
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".xr-attrs dt:hover {\n", | |
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" width: auto;\n", | |
" z-index: 1;\n", | |
"}\n", | |
"\n", | |
".xr-var-attrs,\n", | |
".xr-var-data {\n", | |
" display: none;\n", | |
" background-color: var(--xr-background-color) !important;\n", | |
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"\n", | |
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n", | |
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" display: block;\n", | |
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"\n", | |
".xr-var-data > table {\n", | |
" float: right;\n", | |
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"\n", | |
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".xr-var-data,\n", | |
".xr-attrs {\n", | |
" padding-left: 25px !important;\n", | |
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"\n", | |
".xr-attrs,\n", | |
".xr-var-attrs,\n", | |
".xr-var-data {\n", | |
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"\n", | |
"dl.xr-attrs {\n", | |
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" margin: 0;\n", | |
" display: grid;\n", | |
" grid-template-columns: 125px auto;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dt,\n", | |
".xr-attrs dd {\n", | |
" padding: 0;\n", | |
" margin: 0;\n", | |
" float: left;\n", | |
" padding-right: 10px;\n", | |
" width: auto;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dt {\n", | |
" font-weight: normal;\n", | |
" grid-column: 1;\n", | |
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"\n", | |
".xr-attrs dt:hover span {\n", | |
" display: inline-block;\n", | |
" background: var(--xr-background-color);\n", | |
" padding-right: 10px;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dd {\n", | |
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"\n", | |
".xr-icon-database,\n", | |
".xr-icon-file-text2 {\n", | |
" display: inline-block;\n", | |
" vertical-align: middle;\n", | |
" width: 1em;\n", | |
" height: 1.5em !important;\n", | |
" stroke-width: 0;\n", | |
" stroke: currentColor;\n", | |
" fill: currentColor;\n", | |
"}\n", | |
"</style><pre class='xr-text-repr-fallback'><xarray.DataArray (x: 3)>\n", | |
"array([0, 1, 3])\n", | |
"Dimensions without coordinates: x</pre><div class='xr-wrap' style='display:none'><div class='xr-header'><div class='xr-obj-type'>xarray.DataArray</div><div class='xr-array-name'></div><ul class='xr-dim-list'><li><span>x</span>: 3</li></ul></div><ul class='xr-sections'><li class='xr-section-item'><div class='xr-array-wrap'><input id='section-f2e8a4bf-b6da-4375-b0f0-60902b54116f' class='xr-array-in' type='checkbox' checked><label for='section-f2e8a4bf-b6da-4375-b0f0-60902b54116f' title='Show/hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-array-preview xr-preview'><span>0 1 3</span></div><div class='xr-array-data'><pre>array([0, 1, 3])</pre></div></div></li><li class='xr-section-item'><input id='section-9c78d12e-e79b-4d5f-9f17-20a333d7fc22' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-9c78d12e-e79b-4d5f-9f17-20a333d7fc22' class='xr-section-summary' title='Expand/collapse section'>Coordinates: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-bb53f572-cc08-489c-aa1d-3b143fcb778b' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-bb53f572-cc08-489c-aa1d-3b143fcb778b' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>" | |
], | |
"text/plain": [ | |
"<xarray.DataArray (x: 3)>\n", | |
"array([0, 1, 3])\n", | |
"Dimensions without coordinates: x" | |
] | |
}, | |
"execution_count": 12, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"da = xr.DataArray([0,1,2], dims=['x'])\n", | |
"da.cumsum('x')" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 13, | |
"id": "404d29fd-4943-4060-9c49-5a6eae4e06fc", | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"data": { | |
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"html[theme=dark],\n", | |
"body.vscode-dark {\n", | |
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" --xr-font-color3: rgba(255, 255, 255, 0.38);\n", | |
" --xr-border-color: #1F1F1F;\n", | |
" --xr-disabled-color: #515151;\n", | |
" --xr-background-color: #111111;\n", | |
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" --xr-background-color-row-odd: #313131;\n", | |
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".xr-wrap {\n", | |
" display: block !important;\n", | |
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"}\n", | |
"\n", | |
".xr-text-repr-fallback {\n", | |
" /* fallback to plain text repr when CSS is not injected (untrusted notebook) */\n", | |
" display: none;\n", | |
"}\n", | |
"\n", | |
".xr-header {\n", | |
" padding-top: 6px;\n", | |
" padding-bottom: 6px;\n", | |
" margin-bottom: 4px;\n", | |
" border-bottom: solid 1px var(--xr-border-color);\n", | |
"}\n", | |
"\n", | |
".xr-header > div,\n", | |
".xr-header > ul {\n", | |
" display: inline;\n", | |
" margin-top: 0;\n", | |
" margin-bottom: 0;\n", | |
"}\n", | |
"\n", | |
".xr-obj-type,\n", | |
".xr-array-name {\n", | |
" margin-left: 2px;\n", | |
" margin-right: 10px;\n", | |
"}\n", | |
"\n", | |
".xr-obj-type {\n", | |
" color: var(--xr-font-color2);\n", | |
"}\n", | |
"\n", | |
".xr-sections {\n", | |
" padding-left: 0 !important;\n", | |
" display: grid;\n", | |
" grid-template-columns: 150px auto auto 1fr 20px 20px;\n", | |
"}\n", | |
"\n", | |
".xr-section-item {\n", | |
" display: contents;\n", | |
"}\n", | |
"\n", | |
".xr-section-item input {\n", | |
" display: none;\n", | |
"}\n", | |
"\n", | |
".xr-section-item input + label {\n", | |
" color: var(--xr-disabled-color);\n", | |
"}\n", | |
"\n", | |
".xr-section-item input:enabled + label {\n", | |
" cursor: pointer;\n", | |
" color: var(--xr-font-color2);\n", | |
"}\n", | |
"\n", | |
".xr-section-item input:enabled + label:hover {\n", | |
" color: var(--xr-font-color0);\n", | |
"}\n", | |
"\n", | |
".xr-section-summary {\n", | |
" grid-column: 1;\n", | |
" color: var(--xr-font-color2);\n", | |
" font-weight: 500;\n", | |
"}\n", | |
"\n", | |
".xr-section-summary > span {\n", | |
" display: inline-block;\n", | |
" padding-left: 0.5em;\n", | |
"}\n", | |
"\n", | |
".xr-section-summary-in:disabled + label {\n", | |
" color: var(--xr-font-color2);\n", | |
"}\n", | |
"\n", | |
".xr-section-summary-in + label:before {\n", | |
" display: inline-block;\n", | |
" content: '►';\n", | |
" font-size: 11px;\n", | |
" width: 15px;\n", | |
" text-align: center;\n", | |
"}\n", | |
"\n", | |
".xr-section-summary-in:disabled + label:before {\n", | |
" color: var(--xr-disabled-color);\n", | |
"}\n", | |
"\n", | |
".xr-section-summary-in:checked + label:before {\n", | |
" content: '▼';\n", | |
"}\n", | |
"\n", | |
".xr-section-summary-in:checked + label > span {\n", | |
" display: none;\n", | |
"}\n", | |
"\n", | |
".xr-section-summary,\n", | |
".xr-section-inline-details {\n", | |
" padding-top: 4px;\n", | |
" padding-bottom: 4px;\n", | |
"}\n", | |
"\n", | |
".xr-section-inline-details {\n", | |
" grid-column: 2 / -1;\n", | |
"}\n", | |
"\n", | |
".xr-section-details {\n", | |
" display: none;\n", | |
" grid-column: 1 / -1;\n", | |
" margin-bottom: 5px;\n", | |
"}\n", | |
"\n", | |
".xr-section-summary-in:checked ~ .xr-section-details {\n", | |
" display: contents;\n", | |
"}\n", | |
"\n", | |
".xr-array-wrap {\n", | |
" grid-column: 1 / -1;\n", | |
" display: grid;\n", | |
" grid-template-columns: 20px auto;\n", | |
"}\n", | |
"\n", | |
".xr-array-wrap > label {\n", | |
" grid-column: 1;\n", | |
" vertical-align: top;\n", | |
"}\n", | |
"\n", | |
".xr-preview {\n", | |
" color: var(--xr-font-color3);\n", | |
"}\n", | |
"\n", | |
".xr-array-preview,\n", | |
".xr-array-data {\n", | |
" padding: 0 5px !important;\n", | |
" grid-column: 2;\n", | |
"}\n", | |
"\n", | |
".xr-array-data,\n", | |
".xr-array-in:checked ~ .xr-array-preview {\n", | |
" display: none;\n", | |
"}\n", | |
"\n", | |
".xr-array-in:checked ~ .xr-array-data,\n", | |
".xr-array-preview {\n", | |
" display: inline-block;\n", | |
"}\n", | |
"\n", | |
".xr-dim-list {\n", | |
" display: inline-block !important;\n", | |
" list-style: none;\n", | |
" padding: 0 !important;\n", | |
" margin: 0;\n", | |
"}\n", | |
"\n", | |
".xr-dim-list li {\n", | |
" display: inline-block;\n", | |
" padding: 0;\n", | |
" margin: 0;\n", | |
"}\n", | |
"\n", | |
".xr-dim-list:before {\n", | |
" content: '(';\n", | |
"}\n", | |
"\n", | |
".xr-dim-list:after {\n", | |
" content: ')';\n", | |
"}\n", | |
"\n", | |
".xr-dim-list li:not(:last-child):after {\n", | |
" content: ',';\n", | |
" padding-right: 5px;\n", | |
"}\n", | |
"\n", | |
".xr-has-index {\n", | |
" font-weight: bold;\n", | |
"}\n", | |
"\n", | |
".xr-var-list,\n", | |
".xr-var-item {\n", | |
" display: contents;\n", | |
"}\n", | |
"\n", | |
".xr-var-item > div,\n", | |
".xr-var-item label,\n", | |
".xr-var-item > .xr-var-name span {\n", | |
" background-color: var(--xr-background-color-row-even);\n", | |
" margin-bottom: 0;\n", | |
"}\n", | |
"\n", | |
".xr-var-item > .xr-var-name:hover span {\n", | |
" padding-right: 5px;\n", | |
"}\n", | |
"\n", | |
".xr-var-list > li:nth-child(odd) > div,\n", | |
".xr-var-list > li:nth-child(odd) > label,\n", | |
".xr-var-list > li:nth-child(odd) > .xr-var-name span {\n", | |
" background-color: var(--xr-background-color-row-odd);\n", | |
"}\n", | |
"\n", | |
".xr-var-name {\n", | |
" grid-column: 1;\n", | |
"}\n", | |
"\n", | |
".xr-var-dims {\n", | |
" grid-column: 2;\n", | |
"}\n", | |
"\n", | |
".xr-var-dtype {\n", | |
" grid-column: 3;\n", | |
" text-align: right;\n", | |
" color: var(--xr-font-color2);\n", | |
"}\n", | |
"\n", | |
".xr-var-preview {\n", | |
" grid-column: 4;\n", | |
"}\n", | |
"\n", | |
".xr-var-name,\n", | |
".xr-var-dims,\n", | |
".xr-var-dtype,\n", | |
".xr-preview,\n", | |
".xr-attrs dt {\n", | |
" white-space: nowrap;\n", | |
" overflow: hidden;\n", | |
" text-overflow: ellipsis;\n", | |
" padding-right: 10px;\n", | |
"}\n", | |
"\n", | |
".xr-var-name:hover,\n", | |
".xr-var-dims:hover,\n", | |
".xr-var-dtype:hover,\n", | |
".xr-attrs dt:hover {\n", | |
" overflow: visible;\n", | |
" width: auto;\n", | |
" z-index: 1;\n", | |
"}\n", | |
"\n", | |
".xr-var-attrs,\n", | |
".xr-var-data {\n", | |
" display: none;\n", | |
" background-color: var(--xr-background-color) !important;\n", | |
" padding-bottom: 5px !important;\n", | |
"}\n", | |
"\n", | |
".xr-var-attrs-in:checked ~ .xr-var-attrs,\n", | |
".xr-var-data-in:checked ~ .xr-var-data {\n", | |
" display: block;\n", | |
"}\n", | |
"\n", | |
".xr-var-data > table {\n", | |
" float: right;\n", | |
"}\n", | |
"\n", | |
".xr-var-name span,\n", | |
".xr-var-data,\n", | |
".xr-attrs {\n", | |
" padding-left: 25px !important;\n", | |
"}\n", | |
"\n", | |
".xr-attrs,\n", | |
".xr-var-attrs,\n", | |
".xr-var-data {\n", | |
" grid-column: 1 / -1;\n", | |
"}\n", | |
"\n", | |
"dl.xr-attrs {\n", | |
" padding: 0;\n", | |
" margin: 0;\n", | |
" display: grid;\n", | |
" grid-template-columns: 125px auto;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dt,\n", | |
".xr-attrs dd {\n", | |
" padding: 0;\n", | |
" margin: 0;\n", | |
" float: left;\n", | |
" padding-right: 10px;\n", | |
" width: auto;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dt {\n", | |
" font-weight: normal;\n", | |
" grid-column: 1;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dt:hover span {\n", | |
" display: inline-block;\n", | |
" background: var(--xr-background-color);\n", | |
" padding-right: 10px;\n", | |
"}\n", | |
"\n", | |
".xr-attrs dd {\n", | |
" grid-column: 2;\n", | |
" white-space: pre-wrap;\n", | |
" word-break: break-all;\n", | |
"}\n", | |
"\n", | |
".xr-icon-database,\n", | |
".xr-icon-file-text2 {\n", | |
" display: inline-block;\n", | |
" vertical-align: middle;\n", | |
" width: 1em;\n", | |
" height: 1.5em !important;\n", | |
" stroke-width: 0;\n", | |
" stroke: currentColor;\n", | |
" fill: currentColor;\n", | |
"}\n", | |
"</style><pre class='xr-text-repr-fallback'><xarray.DataArray (x: 3)>\n", | |
"array([0, 1, 3])\n", | |
"Dimensions without coordinates: x</pre><div class='xr-wrap' style='display:none'><div class='xr-header'><div class='xr-obj-type'>xarray.DataArray</div><div class='xr-array-name'></div><ul class='xr-dim-list'><li><span>x</span>: 3</li></ul></div><ul class='xr-sections'><li class='xr-section-item'><div class='xr-array-wrap'><input id='section-dc431afe-460f-4a37-98e5-abe2ed5f7b57' class='xr-array-in' type='checkbox' checked><label for='section-dc431afe-460f-4a37-98e5-abe2ed5f7b57' title='Show/hide data repr'><svg class='icon xr-icon-database'><use xlink:href='#icon-database'></use></svg></label><div class='xr-array-preview xr-preview'><span>0 1 3</span></div><div class='xr-array-data'><pre>array([0, 1, 3])</pre></div></div></li><li class='xr-section-item'><input id='section-f4c36502-e574-4751-8376-8dd96199b3a8' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-f4c36502-e574-4751-8376-8dd96199b3a8' class='xr-section-summary' title='Expand/collapse section'>Coordinates: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><ul class='xr-var-list'></ul></div></li><li class='xr-section-item'><input id='section-2726cc67-16d5-4017-9b63-4142959d2e14' class='xr-section-summary-in' type='checkbox' disabled ><label for='section-2726cc67-16d5-4017-9b63-4142959d2e14' class='xr-section-summary' title='Expand/collapse section'>Attributes: <span>(0)</span></label><div class='xr-section-inline-details'></div><div class='xr-section-details'><dl class='xr-attrs'></dl></div></li></ul></div></div>" | |
], | |
"text/plain": [ | |
"<xarray.DataArray (x: 3)>\n", | |
"array([0, 1, 3])\n", | |
"Dimensions without coordinates: x" | |
] | |
}, | |
"execution_count": 13, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"da_chunked = da.chunk({'x':1})\n", | |
"da_chunked.cumsum('x').load()" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": null, | |
"id": "c5602618-2b27-4ba3-ba0e-e5a3eb0a344c", | |
"metadata": {}, | |
"outputs": [], | |
"source": [] | |
} | |
], | |
"metadata": { | |
"kernelspec": { | |
"display_name": "Python 3 (ipykernel)", | |
"language": "python", | |
"name": "python3" | |
}, | |
"language_info": { | |
"codemirror_mode": { | |
"name": "ipython", | |
"version": 3 | |
}, | |
"file_extension": ".py", | |
"mimetype": "text/x-python", | |
"name": "python", | |
"nbconvert_exporter": "python", | |
"pygments_lexer": "ipython3", | |
"version": "3.9.10" | |
} | |
}, | |
"nbformat": 4, | |
"nbformat_minor": 5 | |
} |
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