Stuart R. Jefferys jefferys
jefferys
/ ensurePackages.R
Last active
February 18, 2021 23:46
Check for needed R packages, optionally installing them.
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| hasPackage <- function( package ) { | |
| suppressWarnings( suppressMessages( | |
| require( package, quietly= TRUE, warn.conflicts= FALSE, character.only= TRUE ) | |
| )) | |
| } | |
| # Set progress=FALSE to hide progress messages. Install messages always | |
| # displayed as they are changing the system. | |
| ensurePackages <- function( packages, installOk= FALSE, progress= TRUE, | |
| exitOnError= installOk ) { |
jefferys
/ micromambaSetup.sbatch
Created
January 8, 2024 19:52
Micromamba local self-contained environment setup using Slurm if avaialble
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| #!/usr/bin/env bash | |
| #SBATCH --job-name mambaEnv | |
| #SBATCH --cpus-per-task 6 | |
| #SBATCH --mem 16G | |
| #SBATCH --partition allnodes | |
| #SBATCH --output ./mambaEnv.%j.out | |
| #SBATCH --error ./mambaEnv.%j.err | |
| # yaml filename is required argument 1 |
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