jenshnielsen

jenshnielsen

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  0%] api/afm_api
writing output... [  0%] api/animation_api
writing output... [  0%] api/api_changes
(line   69) broken    http://matplotlib.org/examples/pylab_examples/contour_corner_mask.py - HTTP Error 404: Not Found
(line  829) ok        http://standards.freedesktop.org/basedir-spec/basedir-spec-latest.html
(line 1080) ok        http://www.voidspace.org.uk/python/configobj.html

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         407795 function calls (397558 primitive calls) in 1.787 seconds

   Ordered by: cumulative time

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
    569/1    0.016    0.000    1.788    1.788 {built-in method builtins.exec}
        1    0.000    0.000    1.788    1.788 fitAChR1.py:4(<module>)
        1    0.000    0.000    1.210    1.210 _minimize.py:36(minimize)
        1    0.010    0.010    1.210    1.210 optimize.py:390(_minimize_neldermead)
      468    0.002    0.000    1.195    0.003 fitAChR1.py:18(dcprogslik)

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   Ordered by: cumulative time

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
    568/1    0.015    0.000  406.373  406.373 {built-in method builtins.exec}
        1    0.000    0.000  406.373  406.373 fitGlyR4.py:1(<module>)
        1    0.000    0.000  405.144  405.144 _minimize.py:36(minimize)
        1    0.257    0.257  405.144  405.144 optimize.py:390(_minimize_neldermead)
     5759    0.248    0.000  404.773    0.070 fitGlyR4.py:83(dcprogslik)
     5758    0.018    0.000  404.721    0.070 optimize.py:283(function_wrapper)
    23036    0.040    0.000  400.698    0.017 likelihood.py:1245(__call__)

jenshnielsen

 Data loaded from file: ../../DCPYPS/dcpyps/samples/glydemo/keA.scn
Concentration of agonist = 300.000 microMolar
Resolution for HJC calculations = 40.0 microseconds
Critical gap length to define end of group (tcrit) = 0.600 milliseconds
	(defined so that all openings in a group prob come from same channel)
Initial and final vectors for bursts calculated asin Colquhoun, Hawkes & Srodzinski, (1996, eqs 5.8, 5.11).

Number of resolved intervals = 11662

jenshnielsen

jenshnielsen

jenshnielsen

#!/usr/bin/python
# -*- coding: utf-8 -*-
"""
Update a simple plot as rapidly as possible to measure speed.
"""

## Add path to library (just for examples; you do not need this)
import initExample

jenshnielsen