jerowe

easyblock = 'Conda'

name = 'gencore_dev'
version = '1.0'

homepage = 'https://github.com/biosails/'
description = """ Live on the bleeding edge with gencore software. """

toolchain = {'name': 'dummy', 'version': ''}

jerowe

import matplotlib.pyplot as plt
import numpy as np
from sklearn import datasets, linear_model, preprocessing
from sklearn.metrics import mean_squared_error, r2_score
import pandas as pd
import json


def parse_devstar_summary(summary_path):
    """

jerowe

FROM continuumio/miniconda3:4.5.11

RUN apt-get update -y; apt-get upgrade -y

# You don't technically need these, but I get kind of twitchy if I don't have vim installed
RUN apt-get install -y vim-tiny vim-athena ssh

# Add a user and switch, using the default root user is BAD
RUN adduser --home /home/flask flask

jerowe

name: flask-app
channels:
  - conda-forge
  - defaults
dependencies:
  - python=3.6
  - flask-cors
  - flask-restful
  - ipython
  - gunicorn

jerowe

from flask import Flask
from flask import jsonify, request
from flask_cors import CORS, cross_origin
import json

app = Flask(__name__)
CORS(app, allow_headers=['Content-Type', 'Access-Control-Allow-Origin',
                         'Access-Control-Allow-Headers', 'Access-Control-Allow-Methods'])

jerowe

#!/usr/bin/env bash

set -x -e

gunicorn --workers=2 --bind=0.0.0.0:5000 --keep-alive=2000 --timeout=2000 --log-level=debug flask_app:app

jerowe

FROM continuumio/miniconda3:4.5.11

RUN apt-get update -y; apt-get upgrade -y

# You don't technically need these, but I get kind of twitchy if I don't have vim installed
RUN apt-get install -y vim-tiny vim-athena ssh

# Add a user and switch, using the default root user is BAD
RUN adduser --home /home/flask flask

jerowe

version: '3'

services:
  flask-app-server:
    build:
      context: flask_app
      dockerfile: Dockerfile
    ports:
      - "5000:5000"
    volumes:

jerowe

{
  "AWSEBDockerrunVersion": 2,
  "volumes": [
  ],
  "containerDefinitions": [
    {
      "name": "flask-app-server",
      "image": "quay.io/jerowe/flask-app-server:latest",
      "update": true,
      "essential": true,

jerowe

version: '3'

# Run as
# docker-compose build; docker-compose up -d
# Check with
# docker ps
# Then check the logs with
# docker logs --tail 50 $container_id
# docker-compose logs --tail 20 tf_counts