jhcepas

def print_table(items, header=None, wrap=True, max_col_width=20, wrap_style="wrap", row_line=False, fix_col_width=False):
    ''' Prints a matrix of data as a human readable table. Matrix
    should be a list of lists containing any type of values that can
    be converted into text strings.

    Two different column adjustment methods are supported through
    the *wrap_style* argument:
    
       wrap: it will wrap values to fit max_col_width (by extending cell height)
       cut: it will strip values to max_col_width

jhcepas

#!/usr/bin/env python
import sys
from collections import defaultdict
from ete2 import Tree
try:
    t = Tree(sys.argv[1])
except IndexError:
    print >>sys.stderr, 'you need to provide a newick tree file as first argument\n\n'
    print >>sys.stderr, 'Usage: Newick2FastTreeConstraints.py tree.nw > constraints.fa'
    sys.exit(1)