Josh Cook jhrcook

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Commands to get permission to push to GitHub on O2.

eval "$(ssh-agent -s)"
ssh-add ~/.ssh/id_rsa_github

Git Large File Storage

A repository can use git large file storage ("git-lfs") to manage large data files.

Installation

The instructions on installing git-lfs for Mac, Windows, and some linux distros are available on the git-lfs GitHub repo Wiki. Since I did this work remotely on the HMS Research Computing Cluster, I do not have root access and had to install from source.

Download the source code of the latest release from here.

	for (letter in letters) {
	cat(letter)
	# do some work
	Sys.sleep(0.1)
	cat("\33[2K\r")
	}
	cat("done\n")

	# load libraries individually
	library(purrr)
	library(magrittr)
	library(tidyr)
	library(dplyr)

	# or just load
	library(tidyverse)

	# some random data to make my own data frame with


	You can insert a code chunk within a code chunk in Rmarkdown as shown here. This code chunk was used in my bookdown book "Package as Analysis" to show a SublimeText3 snippet that itself inserts a code chunk

	````html
	<snippet>
	<content><![CDATA[
	`r ''````{r ${1:chunk_name}}
	$0
	```
	]]></content>