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#!/bin/bash
#
# [email protected] (Jakub Krajniak)
#
# Very simply script that allows to mount the sshfs filesystem
# based on the definition in $HOME/.sshfs
#
# .sshfs:
# <remote mount point> <optional options> <local mount point>
#
@jkrajniak
jkrajniak / kotnetlogin.py
Created April 27, 2014 09:58
netlogin script for the KotNET service
# Simple auto login program for network on Katholieke Universiteit Leuven
# Author: Jakub Krajniak <jkrajniak at gmail dot com>
# License: GPLv2
#
# Requirements:
# - Python >= 2.7
# - mechanize (http://wwwsearch.sourceforge.net/mechanize/)
import argparse
import mechanize
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
@jkrajniak
jkrajniak / topol.xml
Created November 22, 2015 08:52
Example of topology for butane molecule
<topology>
<h5md_particle_group name="atoms" />
<molecules>
<molecule name="BUT" nmols="4000" nbeads="4">
<bead name="C1" type="C" mass="15.035" q="0.0" />
<bead name="C2" type="C" mass="14.028" q="0.0" />
<bead name="C3" type="C" mass="14.028" q="0.0" />
<bead name="C4" type="C" mass="15.035" q="0.0" />
</molecule>
</molecules>
@jkrajniak
jkrajniak / conf.gro
Created December 21, 2015 08:27
Example of butane configuration for votca
BUTANE_UA
16000
1BUT C1 1 3.993 1.000 4.335
1BUT C2 2 3.849 1.048 4.347
1BUT C3 3 3.842 1.184 4.282
1BUT C4 4 3.712 1.225 4.222
2BUT C1 5 13.166 4.707 3.523
2BUT C2 6 13.085 4.646 3.635
2BUT C3 7 13.085 4.740 3.761
2BUT C4 8 12.953 4.737 3.837
@jkrajniak
jkrajniak / esmd_minimize_energy.py
Last active August 10, 2016 19:38
Espresso/pp minimize energy
#!/usr/bin/env python
import sys
import time
import espressomd
system = espressomd.System()
#gamma = 0.001, ftol=1.0, displa 0.001
system.minimize_energy.init(
@jkrajniak
jkrajniak / .gitignore
Created April 27, 2017 08:31
gitignore for overleaf
*
!*.pdf
!*.jpeg
!*.jpg
!*.png
!*.eps
!*.epsf
!*.epsi
!*.pgf
!*.tikz
package main
import (
"context"
"fmt"
"strings"
"time"
"github.com/pkg/errors"