jmarshall

#!/usr/bin/perl
#
# Usage: grep uses: {DIR,DIR}/.github/workflows/*.y*l | actionversions
#    or: git grep uses: | actionversions
#    or: cat .github/workflows/*.y*l | actionversions

my %used;
while (<>) {
    next unless /uses\s*:\s*['"]?([^'"\s]+)/;
    $used{$1}++;

jmarshall

/* bgzfsize.c -- Display uncompressed sizes of BGZF files

   Copyright (C) 2009 John Marshall
*/

#include <string.h>
#include <stdio.h>
#include <stdlib.h>
#include <stdarg.h>
#include <inttypes.h>

jmarshall

#!/bin/sh

skip=`(cat /dev/null $(find . -name 'wt-*' -prune -o -name .gitignore -print) | sed '/^$/d;s&^.*/&&'; printf '.DS_Store,*.dSYM
*.sam,*.bam,*.cram
*.fq,*.vcf
*.bed,*.bai,*.csi,*.crai,*.gz,*.gz.*
*.out,*.expected
aclocal.m4
.git,interesting,wt-*')|tr '\n' ,`

jmarshall

#!/usr/bin/perl
use strict;
use warnings;

my $curfname = "";
my $pkg = "";

my %var = (
  # htslib
  "cram/cram.h" => "cram_h",

jmarshall

/* Hide GitHub dashboards' "Member statuses" sidebar, while hopefully not
   doing too much damage to other web sites. For e.g. Safari, save this
   somewhere and select it in Preferences :: Advanced :: Style sheet. */

@media screen and (min-width: 1012px) {
body.page-responsive > div.application-main > div.d-md-flex
    div.mt-3.border-bottom
        { width: 100% !important }

body.page-responsive > div.application-main > div.d-md-flex

jmarshall

ARG  ubuntu_version=latest
FROM ubuntu:${ubuntu_version}

USER root

RUN apt-get update && apt-get install -y \
	build-essential \
	curl \
	git \
	libbz2-dev \