jmberros

from sys import argv


def main(arg1, arg2):
    # Your logic here
    pass

if __name__ == '__main__':
    main(argv[1], argv[2])

jmberros

from Bio import Entrez


taxids_filename = '/tmp/taxids.list'  # Replace with the path to your Tax IDs file!
with open(taxids_filename) as f:
    tax_ids = f.read().split('\n')

Entrez.email = '[email protected]'  # Put your email here
handle = Entrez.efetch('taxonomy', id=tax_ids, rettype='xml')
response = Entrez.read(handle)

jmberros

from Bio import Entrez

# Read the accessions from a file
accessions_file = 'accessions.txt'
with open(accessions_file) as f:
    ids = f.read().split('\n')

# Fetch the entries from Entrez
Entrez.email = '[email protected]'  # Insert your email here
handle = Entrez.efetch('nuccore', id=ids, retmode='xml')

jmberros

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