joethorley

library(tools)
library(assertthat)

#' @title Filename extension utilities
#' 
#' @description Replaces, adds or removes (rm) extensions from filenames or test whether
#' filename has an extension or is a filename with a particular extension. 
#' Functions are primarily wrappers
#' on the tools package functions \code{file_ext} and \code{file_path_sans_ext}.
#' 

joethorley

brew tap caskroom/cask

brew cask install basictex
sudo tlmgr update --self 
sudo tlmgr update --all 
sudo tlmgr install titling framed inconsolata

joethorley

First of all made sure that command line developer tools (but not XCode were installed)
<http://railsapps.github.io/xcode-command-line-tools.html>

```
brew tap caskroom/cask

brew install Caskroom/cask/xquartz
brew cask install java

brew cask install basictex

joethorley

#!/bin/sh
echo Install all AppStore Apps at first!
# no solution to automate AppStore installs
read -p "Press any key to continue... " -n1 -s
echo  '\n'

echo Install and Set San Francisco as System Font
ruby -e "$(curl -fsSL https://raw.github.com/wellsriley/YosemiteSanFranciscoFont/master/install)"
echo Install Homebrew, Postgres, wget and cask
ruby -e "$(curl -fsSL https://raw.github.com/Homebrew/homebrew/go/install)"

joethorley

normalize <- function(x) {
  if (min(x) > 0) {
    if (max(x) < 1) {
      x <- logit(x)
    } else
      x <- log(x)
  }
  x
}

joethorley

dprint <- function(x, note = NULL, do = getOption("dprint.do", TRUE)) {
  if (!do) return(invisible())
  if (!is.null(note))
    cat("\n**", note, "**\n")
  cat("\n", deparse(substitute(x)), ": \n", sep = "")
  print(x)
}
    

joethorley

#!/bin/bash

# store the current dir
CUR_DIR=$(pwd)

# Let the person running the script know what's going on.
echo "\n\033[1mPulling in latest changes for all repositories...\033[0m\n"

# Find all git repositories and update it to the master latest revision
for i in $(find . -name ".git" | cut -c 3-); do

joethorley

#!/bin/bash

# Call this file with `bash ./project-create.sh project-name [service-name]`
# - project-name is mandatory
# - service-name is optional

# This will creates 4 directories and a git `post-receive` hook.
# The 4 directories are:
# - $GIT: a git repo
# - $TMP: a temporary directory for deployment