Jonas Almeida jonasalmeida

VLWMMa

	$('<li> <a href="javascript:myPatientsFun()">JSON_Patients</a></li>').appendTo($('.navbar-nav')[0]);
	myPatientsFun = function() {
	if($('#JSON_Patients').length>0){$('#JSON_Patients').remove()}
	else{
	var myPatients = Patients.find().fetch();
	$('.row-fluid').prepend($('<div id="JSON_Patients"><a style="color:red" href="javascript:myPatientsFun()">Hide ('+myPatients.length+')</a></div>'));
	$('#JSON_Patients').append($('<pre>'+JSON.stringify(myPatients,undefined,3)+'</pre>'));
	}
	}

	// SPARQL query composition at http://agalpha.mathbiol.org/repositories/tcga#query/r/TCGA-CM-4743-01A-01_URL

	label='TCGA-CM-4743-01A-0' // example of a label
	url = 'http://agalpha.mathbiol.org/download?file=query.json&accept=application%2Fsparql-results%2Bjson&path=%2Frepositories%2Ftcga%3Fquery%3Dselect%2520distinct%2520%253Fo%2520%253Fu%250Awhere%2520%257B%250A%2509%253Ft%2520a%2520%253Chttp%253A%252F%252Fpurl.org%252Ftcga%252Fcore%2523platform%253E.%250A%2520%2520%2509%253Ft%2520%253Chttp%253A%252F%252Fwww.w3.org%252F2000%252F01%252Frdf-schema%2523label%253E%2520%2522tissue_images%2522.%250A%2520%2520%2509%253Fo%2520%253Chttp%253A%252F%252Fpurl.org%252Ftcga%252Fcore%2523platform%253E%2520%253Ft.%250A%2520%2520%2509%253Fo%2520rdfs%253Alabel%2520%253FL.%250A%2520%2520%2509filter%2520REGEX(%253FL%252C%72'+label+'1%27)%250A%2520%2520%2520%2520%253Fo%2520tcga%253Aurl%2520%253Fu%250A%257D%26infer%3Dfalse'
	$.getJSON(url,function(x){
	y=x.results.bindings.map(function(xi){return xi.u.value});
	console.log('

	// One way to measure goodness of fit is to
	// assess the even distribution of values arround
	// the regression line. This is a non-parameric
	// approach that is not sensitive to the magitude
	// of the noise, only to its structure

	RSD={
	res2sign:function(r){ // counts same-sideness of residuals in array r
	var rs = 0
	for(var i=1;i<r.length;i++){rs+=((r[i]*r[i-1])>0)}

	var http = require('http')
	var port = process.env.PORT \|\| 1337;
	http.createServer(function(req, res) {
	res.writeHead(200, {
	'Content-Type': 'text/plain',
	'Access-Control-Allow-Origin': '*' // CORS
	});
	if(req.url.match('=')){
	var pp=req.url.slice(2).split('=') // parameter array
	var parm={}

	<h2>Mean Absolute Deviation = <span id="y"> ... </span></h2>
	<p><textarea id="x"></textarea></p>
	(separate values with commas)