jtprince

#!/usr/bin/env python

import sys
import sqlite3
import argparse
import re

parser = argparse.ArgumentParser(description='deletes tables matching some regular expression')
parser.add_argument('database', help='the database file')
parser.add_argument('regexp', help='the regexp you are matching')

jtprince

# [be careful, though, if you switch the order of introduction, then you will get this error:
# <file>.rb:11:in `<main>': superclass mismatch for class Dog (TypeError)
class Dog < Hash
  def silly(key)
    self[key] = 88 + key.to_i
  end
end

# This is the *key* point: we can re-open this class and it won't give us any trouble!
class Dog

jtprince

require "bundler/gem_tasks"

@module_name = Mspire::Mass
@gem_name = 'mspire-mass'
@gem_path_name = @gem_name.gsub('-','/')

require "#{@gem_path_name}/version"

require 'rspec/core'
require 'rspec/core/rake_task'

jtprince

require 'Win32API'
require 'fileutils'
require 'tk'

# supposed to hide base window... not working with cygwin ruby
getConsoleWindow = Win32API.new("kernel32" , "GetConsoleWindow" , [] , 'L')
ptr_to_console = getConsoleWindow.call()
wndConsole = Win32API.new( "user32" , "ShowWindow" , ['p' , 'i'] , 'i' )
wndConsole.call( ptr_to_console , 1 )

jtprince

#!/usr/bin/env ruby

require 'distribution'
require 'gnuplot'
require 'csv'

params = {
  step: 0.01,
  stop: 1.0,
  xwiggle: 0.01,

jtprince

#!/usr/bin/env ruby
# sc - screenshot utility using imagemagick 'import'

require 'optparse'
require 'ostruct'
require 'shellwords'
require 'fileutils'

viewers = {
  'g' => 'geeqie',

jtprince

#!/usr/bin/env ruby

require 'open-uri'
require 'mspire/digester' # gem install mspire
require 'bio'
require 'set'

accessions = ARGV[0,2]
missed_cleavages = ARGV[2].to_i

jtprince

# http://rosettacode.org/wiki/Twelve_statements

#1.  This is a numbered list of twelve statements.
#2.  Exactly 3 of the last 6 statements are true.
#3.  Exactly 2 of the even-numbered statements are true.
#4.  If statement 5 is true, then statements 6 and 7 are both true.
#5.  The 3 preceding statements are all false.
#6.  Exactly 4 of the odd-numbered statements are true.
#7.  Either statement 2 or 3 is true, but not both.
#8.  If statement 7 is true, then 5 and 6 are both true.

jtprince

# do what the heck you want to public license (see doc end)

# gem install ruby-svg   # provides SVDMatrix
require 'ruby-svd'

class SVDMatrix < Matrix
  def self.[](*rows)
    mat = self.new(rows.size,rows.first.size)
    rows.each_with_index {|row,i| mat.set_row(i, row) }
    mat

jtprince

#!/usr/bin/env ruby

# requires rb-inotify (will only work on linux)
require 'rb-inotify'

substitute = '{{}}'
div = '--'

if ARGV.size < 2
  prog = File.basename(__FILE__)