judell’s gists

judell / gist:4ba3a5eb6828247c1267

Last active August 29, 2015 14:24

arxiv trackbacks

	curl https://hypothes.is/api/search?user=arxiv&limit=30

	{
	"total": 26,
	"rows": [
	{
	"updated": "2015-07-10T16:19:44.647522+00:00",
	"target": null,
	"created": "2015-07-10T16:19:44.647511+00:00",
	"text": "[This article](http://arxiv.org/abs/0704.0354) was referenced by [\"179. Followup on ekpyrosis and phoenix universe\"](http://www.nonequilibrium.net/179-followup-ekpyrosis-phoenix-universe/) on Thursday, January 13 2000.",

judell / gist:bd6267a703ea9a915a3a

Created July 10, 2015 19:43

	Here's an API query that retrieves an annotation:

	https://hypothes.is/api/annotations/AC0wFYQFQMGCSDQ9nfFW0A

	Looking inside the result we find these equivalences:

	"link": [
	{
	"href": "http://jcs.biologists.org/content/127/14/3052.long"
	},

judell / mmr.py

Last active February 20, 2025 09:32

monthly morphometry report

	import requests, re, json, types, traceback

	class HypothesisAnnotation:

	def __init__(self, row):
	"""Encapsulate relevant parts of one row of a Hypothesis API search."""

	self.tags = []
	if row.has_key('tags') and row['tags'] is not None:
	self.tags = row['tags']

judell / gist:6ec4af6392914e946d3b

Created July 30, 2015 18:56

homepage vs dev env bookmarklets

	Homepage:
	javascript:(function(){window.hypothesisConfig=function(){return{showHighlights:true};};var d=document,s=d.createElement('script');s.setAttribute('src','https://hypothes.is/app/embed.js');d.body.appendChild(s)})();


	Dev env:
	javascript:%28function %28window%2C document%2C location%29 %7B%0A var embedUrl %3D %27http%3A//localhost%3A5000/embed.js%27%3B%0A var isHTTPS %3D location.protocol.indexOf%28%27https%27%29 %3D%3D%3D 0%3B%0A var isEmbedHTTPS %3D embedUrl.indexOf%28%27https%27%29 %3D%3D%3D 0%3B%0A var isLocal %3D location.protocol %3D%3D%3D %27file%3A%27%3B%0A var isPDF %3D location.pathname.toLowerCase%28%29.indexOf%28%27.pdf%27%29 > 0%3B%0A var hasPDFjs %3D typeof window.PDFJS %21%3D%3D %27undefined%27%3B%0A var embed%3B%0A%0A if %28isLocal %26%26 %21isPDF%29 %7B%0A window.alert%28%27Sorry%2C Hypothesis doesn%5C%27t work on this type of file. Only PDF%5C%27s can be annotated locally.%27%29%3B%0A return%3B%0A %7D%0A if %28isPDF %26%26 %21hasPDFjs%29 %7B%0A window.alert%28%27S

judell / sitc.js

Last active August 29, 2015 14:27

SITC Prototype: Phase 1

	/*
	npm install dom-anchor-text-quote
	npm install dom-seek
	npm install jquery
	browserify sitc.js -o sitc-bundle.js
	*/


	/*
	<script src="./sitc-bundle.js"></script>

judell / trello.py

Created August 13, 2015 00:02

trello / github

	import requests, json, re

	backlog_triage_list = '55c39b276b173fdfaef897f1'
	backlog_not_prioritized_list = '55a3fb6903a766588973e8c5'
	backlog_backlog_list = '55796ed5c0e8c6a2f25dba6e'

	sprint_up_next = '557936eed7f9bf6d2dd1521e'
	sprint_in_progress = '5578c7a3f955667e94879086'
	sprint_deployed = '555cab97ea82d6a4151b7f92'
	sprint_delivered = '555cb1ea055301c6f20e50df'

judell / anchor.js

Created August 20, 2015 00:32

	/*
	npm install dom-anchor-text-quote
	npm install dom-seek
	npm install jquery
	npm install xpath-range
	browserify anchor.js -o anchor-bundle.js
	*/


	/*

judell / gist:69362cd81b16e24c4624

Created September 25, 2015 21:34

2015-09-25 testing narrative: initial db state for test url

judell / rrid.py

Created November 23, 2015 16:37

rrid annotation

	import json, requests, re, traceback, pyramid, urlparse
	from lxml import etree
	try:
	from urllib.parse import urlencode
	except ImportError:
	from urllib import urlencode

	host = 'h.jonudell.info' # or your own
	port = 8081
	host_port = 'http://' + host + ':' + str(port)

judell / gist:551e8cc86d8d5abeff05

Created December 17, 2015 19:18

	{
	"target": [{
	"scope": ["http://www.jneurosci.org/content/35/20/7777.full"],
	"selector": [{
	"exact": "nif-0000-30467",
	"prefix": "f Health; ",
	"type": "TextQuoteSelector",
	"suffix": ") and lesio"
	}]
	}],

Jon Udell judell