jvhaarst

#!/usr/bin/env python
'''
Automatically estimate insert size of the paired-end reads for a given SAM/BAM file.
Usage: getinsertsize.py <SAM file> or samtools view <BAM file> | getinsertsize.py -
Author: Wei Li
'''


from __future__ import print_function
import sys;

jvhaarst

# bootstrap.yml

---
- hosts: newservers
  vars:
  - ubuntu_release: raring
  - logwatch_email: <your email addy>
    # crypted passwords, generated on a Linux box using: 
    # echo 'import crypt,getpass; print crypt.crypt(getpass.getpass(), "$6$YOURSALT")' | python -
  - root_password: ''

jvhaarst

__author__ = 'danlmarmot'
"""
This Python script measures hash performance, and attempts to answer this question:
'Given a hash function and a block size for reading, which is the fastest hash function and block size?'

There's no warm up, there's no cache/memory/whatever filling, just a simple way to explore performance for
commonly used functions with the timeit library

"""

jvhaarst

[DEFAULT]
login = [YOUR LOGIN]
password = [YOUR PASSWORD]
START_URL = https://slimmemeterportal.nl/login
LOGIN_URL = https://slimmemeterportal.nl/user_session
DOWNLOAD = [LOCATION TO STORE THE FILES]