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Generally confused.

Jeffrey jvwong

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jvwong / README.md
Last active April 7, 2016 16:21
How do I retrieve a graph diagram and source description from an EXTENDED_BINARY_SIF interaction?

Tracing from SIF to Source

Goal

Trace an interaction declared in EXTENDED_BINARY_SIF to the BioPAX description, visualize the BioPAX representation in the form of a network, and identify the source database record. This gist crosses many aspects of the tools and services offered through Pathway Commons.

Audience

This is aimed at a computational audience. If you know what SIF is and you have used curl you should be fine. It would help if you are familiar with BioPAX although this is not essential.

What You Need

  • Access to a command line terminal to run curl
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jvwong / java_switch.md
Last active June 22, 2016 10:18
Switching Java on OSX

List the current installed Java versions

$ /usr/libexec/java_home -V

Install the version desired

Apple provides their own version of 6 (Java for OS X 2015-001)

List the current installed Java versions

You should see the version installed