Karl Broman kbroman

The recent Open Science SE site got shut down by StackExchange folks.

I am all for that proposal, trying to get open science going again on SE.

However, an alternative is Discourse, created by Jeff Atwood, et al.

Example forums:

	#!/usr/bin/env python
	#
	# init and step probabilities for RI by sib-mating
	# values returned are log of probabilities
	#
	# True genotypes BB or DD
	# forward direction means BxD for cross

	import math # for log

	#include <Rcpp.h>
	using namespace Rcpp;

	// For each row, find which column has the minimum value
	// With ties, pick the first
	// Result is indexed starting at 1
	// [[Rcpp::export]]
	IntegerVector whichmin_byrow(const NumericMatrix& x)
	{
	const int n = x.rows();

	---
	title: "Test packageDescription"
	author: "Karl Broman"
	date: "October 19, 2015"
	output: html_document
	---

	knitr package version: `r packageDescription("knitr")$Version`

	<!DOCTYPE HTML>
	<html> <head>
	<title>BioC 2015 live coding</title>
	<style>body{font-family:sans-serif;}</style>
	</head>
	<body>
	<h2>BioC 2015 live coding</h2>

	<script charset="utf-8"
	type="text/javascript"

	#!/usr/bin/env python


	import csv

	def read_csv_file (filename):

	data = {}
	with open(filename) as csvfile:
	rows = csv.reader(csvfile)

	---
	title: "Test R/qtlcharts"
	author: "Karl Broman"
	date: "June 22, 2015"
	output: ioslides_presentation
	---

	## iplotCorr

	```{r, iplotCorr, echo=FALSE, message=FALSE}

	// hello world with node + express + consolidate + swig + mongodb
	//
	// grab name from MongoDB doc (course db, hello_mongo_express collection)
	//
	// type 'node hello_mongo.js' and go to http://localhost:8080

	var express = require('express'),
	app = express(),
	cons = require('consolidate'),
	MongoClient = require('mongodb').MongoClient;

	#include <Rcpp.h>
	using namespace Rcpp;

	// [[Rcpp::export]]
	void r_message(std::string text)
	{
	Rcpp::Function msg("message");
	msg(text);
	}