kdm9

from Bio import SeqIO

input_file = "test.fasta"
output_file = "protein.fasta"

input_file_reader = SeqIO.parse(open(input_file), "fasta")
output_file_writer = open(output_file, "w")

translated_seqs = []

kdm9

matplot(..., ylab=parse(text="VWC (m^3*/m^3*)"))

kdm9

#!/bin/bash
set -e
set -x

if [ $# -ne 1 ]
then
echo "USAGE: fastqc.sh SAMPLENAME"
fi

sample=$1

kdm9

sed -e 's/,/ \& /g' -e 's/$/ \\\\/g' <csv >table.latex

kdm9

def write_timestream(self, image):
    assert(isinstance(image, TimeStreamImage))
    fn = get_filename(image)
    write_image(fn, image)

kdm9

from skimage.io import imread
import cv2
path = ""
arr = imread(path, plugin="freeimage")
print arr
print arr.shape
arr = cv2.imread(path)
print arr
print arr.shape

kdm9

Keybase proof

I hereby claim:

• I am kdmurray91 on github.
• I am daube (https://keybase.io/daube) on keybase.
• I have a public key whose fingerprint is 656C 0632 1EAB 2C3F 3837 9767 17C2 8EB1 A4B4 EE6A

To claim this, I am signing this object:

kdm9

install.packages(c("methods", "Rcpp", "devtools", "ape"))
source("http://bioconductor.org/biocLite.R")
biocLite()
biocLite("GenomicRanges")
biocLite("Biobase")
biocLite("rhdf5")
install_github("vsbuffalo/tasselr")
install.packages("seqinr",repos = "http://cran.csiro.au/")
install.packages("phangorn",repos = "http://cran.csiro.au/")

kdm9

#include <seqan/seq_io.h>

int main(int argc, char **argv)
{
    std::string id, seq, qual;

    if (argc < 2) {
        return 1;
    }

kdm9

#include <seqan/seq_io.h>

using namespace seqan;

int main(int argc, char **argv)
{
    std::string id, seq, qual;

    if (argc < 2) {
        return 1;