create_pdf_for_all_networks.ipynb

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   "source": [
    "## py2cytoscape Tips\n",
    "\n",
    "### 1. Create PDF files for each network in your current Cytoscape session\n",
    "\n",
    "This code snippet generates PDF images for all networks in the current session."
   ]
  },
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     "text": [
      "Python 3.5.2 :: Anaconda custom (x86_64)\r\n"
     ]
    }
   ],
   "source": [
    "!python --version"
   ]
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   "outputs": [],
   "source": [
    "# Boilerplate: Import required packages\n",
    "from py2cytoscape.data.cyrest_client import CyRestClient\n",
    "\n",
    "# Create Client\n",
    "cy = CyRestClient()\n",
    "\n",
    "all_network_ids = cy.network.get_all()\n",
    "\n",
    "for id in all_network_ids:\n",
    "    # Get reference to the network\n",
    "    net = cy.network.create(id)\n",
    "    \n",
    "    # Get network title\n",
    "    net_name = net.get_network_value('name').decode(\"utf-8\") \n",
    "\n",
    "    # Create PDF for it\n",
    "    pdf_obj = net.get_pdf()\n",
    "    \n",
    "    # Save it into a file\n",
    "    with open(net_name + \"_\" + str(id) + \".pdf\", \"wb\") as fout:\n",
    "        fout.write(pdf_obj)    "
   ]
  }
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