Kenny Gillen kennethgillen

Senior IT leader - secure research computing, infrastructure & high-performance computing

kennethgillen / tail-logs-restart-pixeldata.bash

Last active April 6, 2018 15:44

If OMERO PixelData process is choking on a set of uploaded files, set a shell to restart it to allow the batch to be overcome.

	tail -fn0 /opt/omero/server/OMERO.server/var/log/PixelData-0.log \| \
	while read line ; do
	echo "$line" \| grep "ome.conditions.InternalException: Wrapped Exception: (java.lang.OutOfMemoryError)"
	if [ $? = 0 ]
	then
	sudo -u omero-server /opt/omero/server/OMERO.server/bin/omero admin ice "server stop PixelData-0" && echo $(date) restarted PixelData process \| tee ~/command_log.txt
	fi
	done

kennethgillen / omero-user-sessions-unique_users

Last active May 25, 2018 10:29

Check_MK local check for OMERO server which returns count of unique users logged-in to an OMERO server

	#!/usr/bin/python
	from commands import getstatusoutput
	import datetime
	import socket

	# [email protected]
	# This code is a Check_MK local check, designed to query an OMERO server via `omero sessions who`
	# and return the number of logged in OMERO users to Check_MK.
	# Check_MK reference: https://mathias-kettner.de/checkmk_localchecks.html
	#

kennethgillen / pysearch

Last active November 1, 2018 17:15

# A simple shim using WRK to make fast Trello searching work from the UI.

	#!/usr/bin/python

	# A simple shim using WRK to make fast Trello searching work from the CLI.

	import subprocess
	import sys
	import re
	import argparse

	debug= False