I hereby claim:
- I am klprint on github.
- I am subfish (https://keybase.io/subfish) on keybase.
- I have a public key ASB7mGynrtArFJP7l3XxhFVDHk4Yxr5JqkMl_9mFEjPVMwo
To claim this, I am signing this object:
I hereby claim:
To claim this, I am signing this object:
| library(hdf5r) | |
| library(Matrix) | |
| source("https://gist.githubusercontent.com/klprint/1ab4468eb3c54abcf0422dec6223b8fc/raw/b4cc33f5b4da25bcc2e678cf46b692fe67605460/single_cell_functions.R") | |
| library(SingleCellExperiment) | |
| library(tidyverse) | |
| sce.raw.pca <- function(sce, k = 100){ | |
| umi <- assay(sce, "umi") | |
| cat("Getting informative genes\n") |
| library(hdf5r) | |
| library(Matrix) | |
| source("https://gist.githubusercontent.com/klprint/1ab4468eb3c54abcf0422dec6223b8fc/raw/b4cc33f5b4da25bcc2e678cf46b692fe67605460/single_cell_functions.R") | |
| library(SingleCellExperiment) | |
| library(tidyverse) | |
| library(liger) | |
| sce.raw.pca <- function(sce, k = 100){ | |
| umi <- assay(sce, "umi") | |
| <!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset="utf-8" /> | |
| <style>body{background-color:white;}</style> | |
| <script>(function() { | |
| // If window.HTMLWidgets is already defined, then use it; otherwise create a | |
| // new object. This allows preceding code to set options that affect the | |
| // initialization process (though none currently exist). | |
| window.HTMLWidgets = window.HTMLWidgets || {}; |
| library(shiny) | |
| library(tidyverse) | |
| if(!require(plotly)){ | |
| install.packages("plotly") | |
| } | |
| if(!require(viridis)){ | |
| install.packages("viridis") | |
| } |