I hereby claim:
- I am klprint on github.
- I am subfish (https://keybase.io/subfish) on keybase.
- I have a public key ASB7mGynrtArFJP7l3XxhFVDHk4Yxr5JqkMl_9mFEjPVMwo
To claim this, I am signing this object:
I hereby claim:
To claim this, I am signing this object:
library(hdf5r) | |
library(Matrix) | |
source("https://gist.githubusercontent.com/klprint/1ab4468eb3c54abcf0422dec6223b8fc/raw/b4cc33f5b4da25bcc2e678cf46b692fe67605460/single_cell_functions.R") | |
library(SingleCellExperiment) | |
library(tidyverse) | |
sce.raw.pca <- function(sce, k = 100){ | |
umi <- assay(sce, "umi") | |
cat("Getting informative genes\n") |
library(hdf5r) | |
library(Matrix) | |
source("https://gist.githubusercontent.com/klprint/1ab4468eb3c54abcf0422dec6223b8fc/raw/b4cc33f5b4da25bcc2e678cf46b692fe67605460/single_cell_functions.R") | |
library(SingleCellExperiment) | |
library(tidyverse) | |
library(liger) | |
sce.raw.pca <- function(sce, k = 100){ | |
umi <- assay(sce, "umi") | |
<!DOCTYPE html> | |
<html> | |
<head> | |
<meta charset="utf-8" /> | |
<style>body{background-color:white;}</style> | |
<script>(function() { | |
// If window.HTMLWidgets is already defined, then use it; otherwise create a | |
// new object. This allows preceding code to set options that affect the | |
// initialization process (though none currently exist). | |
window.HTMLWidgets = window.HTMLWidgets || {}; |
library(shiny) | |
library(tidyverse) | |
if(!require(plotly)){ | |
install.packages("plotly") | |
} | |
if(!require(viridis)){ | |
install.packages("viridis") | |
} |