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Kensuke Numakura knmkr

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knmkr / show_sorted_du.sh
Created April 17, 2013 12:16
show sorted `du`
du -k | sort -nr | less
@knmkr
knmkr / install_lftp.md
Created April 17, 2013 14:38
How to install `lftp`, on CentOS.

#How to install lftp, on CentOS.

1.Get latest source code.

$ curl -O http://ftp.yar.ru/pub/source/lftp/lftp-4.4.5.tar.gz

2.展開,コンパイル.

@knmkr
knmkr / use_tabix.md
Last active December 16, 2015 08:19
How to use `tabix`.

#How to use tabix

tabixはvcfやbed形式などのタブ区切りファイルにインデックスを張るソフトウェア.インデックスファイルの拡張子は.tbi. 1000 Genomes Projectのftpでは,vcfファイルに対して*.vcf.gz.tbiが用意されているので,tabixを使って閲覧すると何かと便利なはず.

##Install

$ wget http://sourceforge.net/projects/samtools/files/tabix/tabix-0.2.6.tar.bz2
$ bzip2 -dc tabix-0.2.6.tar.bz2 | tar xvf -
@knmkr
knmkr / get_vcf_from_1gk.md
Last active February 6, 2024 16:11
How to get vcf-files & bam-files from 1000 Genomes Project ftp.

#How to get vcf-files & bam-files from 1000 Genomes Project ftp.

##Preparation Download current.tree from 1000 genomes ftp.

$ wget ftp.1000genomes.ebi.ac.uk:/vol1/ftp/current.tree

##Getting path of vcf & bam

@knmkr
knmkr / pip_install_django1.0.md
Last active December 16, 2015 09:48
Install Django 1.0.4

Now, at April 2013, Django version 1.0.4 cannot be installed by following pip-command:

$ pip install Django==1.0.4
Downloading/unpacking Django==1.0.4
  Could not find a version that satisfies the requirement Django==1.0.4 (from versions: )
No distributions matching the version for Django==1.0.4
Storing complete log in /Users/numa/.pip/pip.log
@knmkr
knmkr / install_rvm.md
Created April 19, 2013 18:06
Install `rvm` on Mac OS X

#Install rvm on Mac OS X

##Install

$ git clone --depth 1 git://github.com/wayneeseguin/rvm.git
$ cd rvm
$ ./install

Add following line to .zshrc

@knmkr
knmkr / get_photos_from_tumblr.py
Created April 21, 2013 18:29
Get photos from my tumblr `likes`.
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import os
import urllib
import pytumblr # https://github.com/tumblr/pytumblr
# set yours:
CONSUMER_KEY = ''
@knmkr
knmkr / po2mo.md
Created April 22, 2013 11:54
How to convert .po to .mo (Mac OS X)

localeのファイル.po(バイナリ)を.mo(テキスト)に変換するコマンドは,

$ msgunfmt -h
使用法: msgunfmt [オプション] [ファイル]...

バイナリメッセージカタログを Uniforum 形式の .po ファイルに変換.
...
@knmkr
knmkr / get_all_photos_from_tumblr_likes.py
Last active July 9, 2018 11:38
Get all photos from my tumblr `likes`.
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import sys
import os
import urllib
from time import sleep
import pytumblr # https://github.com/tumblr/pytumblr
# set yours:
@knmkr
knmkr / how_to_use_introjs.md
Last active December 16, 2015 15:19
Intro.jsを使ってみる