kojix2

require 'benchmark_driver'

Benchmark.driver do |x|
  x.prelude <<~RUBY
    require 'numo/narray'
    require 'prime'

    class Integer
      def devisors
        [1].product(*prime_division.map { |p, n| (0..n).map { p**_1 } }).map { _1.inject(:*) }.sort

kojix2

# c2ffi: Clang-based FFI wrapper generator
# https://github.com/rpav/c2ffi

namespace :c2ffi do
  desc 'Generate metadata files (JSON format) using c2ffi'
  task :generate do
    FileUtils.mkdir_p('codegen/c2ffilogs')
    header_files = FileList['■■■/src/*.h']
    header_files.each do |file|
      basename = File.basename(file, '.h')

kojix2

Ruby-htslib - 次世代シーケンサーのデータをRubyで操作する 最終報告

2021-03-15 kojix2

Github - https://github.com/kojix2/ruby-htslib

Slack - https://sciruby.slack.com

概要

　

kojix2

require 'ffi'

class S < FFI::Struct
  layout :i, :int
end

a = S.new

a[:i] = 10

kojix2

# frozen_string_literal: true

require "ffi"

module FFI
  class BitStruct < Struct
    class << self
      # def union_layout(*args)
      #   Class.new(FFI::Union) { layout(*args) }
      # end

kojix2

ruby-htslib - High-throughput sequencing data manipulation for Ruby - Interim report

(Created by Google Translate)

2021-01-25 kojix2

Github: https://github.com/kojix2/ruby-htslib

Slack: https://sciruby.slack.com (Japanese)

Overview

kojix2

Ruby-htslib - 次世代シーケンサーのデータをRubyで操作する 中間報告

2021-01-16 kojiox2

Github - https://github.com/kojix2/ruby-htslib

Slack - https://sciruby.slack.com

概要

　

kojix2

a

kojix2

require 'gr'
require 'gr3'
require 'numo/narray'
require 'optparse'

# コマンドラインオプション
options = { radius: 1.0, size: 500 }
OptionParser.new do |opt|
  opt.on('-o', '--output PATH', String) { |v| options[:save_path] = v }
  opt.on('-r', '--radius VALUE', Float) { |v| options[:radius] = v }

kojix2

Bedtools Cheatsheet

General:

Tools	Description
flank	Create new intervals from the flanks of existing intervals.
slop	Adjust the size of intervals.
shift	Adjust the position of intervals.
subtract	Remove intervals based on overlaps b/w two files.