Konrad Förstner konrad
konrad
/ log_parser.rb
Created
January 8, 2010 11:49
This "solves" a problem with the git log parser of CruiseControl.rb and ISO-8859-1 encoding.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| module SourceControl | |
| class Git | |
| class LogParser | |
| def parse(log) | |
| @log = log | |
| revisions = [] | |
| revision = nil | |
| log.each do |line| | |
| next if line.blank? |
konrad
/ speedupmp3.sh
Created
May 29, 2010 17:00
Shell script to increases the speed of given mp3 files.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/bin/sh | |
| # | |
| # Increases the speed of given mp3 files. | |
| # | |
| # Published by Konrad Förstner CC0 (Creative Commons Zero) | |
| # No Rights Reserved | |
| # http://creativecommons.org/publicdomain/zero/1.0/ | |
| # | |
| # To the extent possible under law, Konrad Förstner has waived all | |
| # copyright and related or neighboring rights to this work. This |
konrad
/ CouchDB_benchmark_plots_combined.R
Created
June 1, 2010 07:31
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| x <- c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, |
konrad
/ development.rb
Created
June 3, 2010 16:10
Set CouchDB numbers of revision to a certain value
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Set CouchDB numbers of revision to a certain value | |
| require "httpclient" | |
| COUCH_CONFIG = YAML.load_file("#{RAILS_ROOT}/config/couchdb.yml") | |
| environment = "development" | |
| server = COUCH_CONFIG[environment]["host"] | |
| port = COUCH_CONFIG[environment]["port"] | |
| db_root_string = "my_couch" | |
| db_name = db_root_string + COUCH_CONFIG[environment]["database_suffix"] | |
| client = HTTPClient.new | |
| no_of_revisions = 10 |
konrad
/ send_msg_to_osw.py
Created
June 5, 2010 15:17
A little example how to send messages to a OneSociaWeb server in Python.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/usr/bin/python | |
| """ | |
| FUNCTION: A little example how to send messages to a OneSociaWeb server | |
| (http://onesocialweb.org). Heavily inspired by Tyler | |
| Gillies' ruby script with the same purpose. | |
| Copyright (c) 2010, Konrad Foerstner <[email protected]> | |
| Permission to use, copy, modify, and/or distribute this software for |
konrad
/ Genbank genome downloader
Created
April 2, 2011 17:14
A one-liner to get all the genome files form GenBank
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # I always forget how easy it is to download all genome files from | |
| # Genbank. Sure you can get any other file type (e.g. all protein | |
| # file = *faa) instead. | |
| wget -c -r -A "*fna" ftp://ftp.ncbi.nih.gov/genomes/Bacteria/ |
konrad
/ generate_sam_test.py
Created
September 28, 2011 18:03
A short test to generate a test SAM file with a long read
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import sys | |
| base_seq = "ACGT" | |
| seq = base_seq * int(int(sys.argv[1])/len(base_seq)) | |
| spacer_length = 10000 | |
| header = "@HD VN:1.0\n@SQ SN:Mock LN:%s" % (len(seq) + spacer_length) | |
| cigar_string = "%sM" % (len(seq)) | |
| genome_line = "62DJLAAXX_8:1:17056:1190 0 Mock 1 255 %s * 0 0 %s * NM:i:0 MD:Z:30 NH:i:1" % ( | |
| cigar_string, seq) |
konrad
/ pubmed_search_bookmarkelt.js
Created
March 22, 2012 12:04
Pubmed search bookmarklet - search marked text in Pubmed
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| /* | |
| Use this as a bookmarklet by saving it as a web browser bookmark. Then mark a piece of text in a page and click the bookmark. The marked text will be searched in Pubmed. | |
| */ | |
| javascript:(function(){ | |
| var selected_text = ''; | |
| if (window.getSelection){ | |
| selected_text = window.getSelection(); | |
| } | |
| else if (document.getSelection){ |
konrad
/ convert_video_to_spedup_mp3.sh
Created
July 16, 2012 11:18
Script to convert videos to mp3 with higher speed
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| SPEED=1.5 | |
| for FILE in $@ | |
| do | |
| WAV_FILE=$(basename $FILE .mp4).wav | |
| WAV_FILE_SPED_UP=$(basename $FILE .mp4)_spedup.wav | |
| MP3_FILE=$(basename $FILE .mp4)_spedup.mp3 | |
| ffmpeg -i $FILE -vn $WAV_FILE | |
| sox $WAV_FILE $WAV_FILE_SPED_UP tempo $SPEED | |
| lame $WAV_FILE_SPED_UP $MP3_FILE |
konrad
/ csv2xlsx.py
Last active
April 1, 2022 16:46
Converts a CSV (tab delimited) file to an Excel xlsx file
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #!/usr/bin/env python | |
| """ | |
| FUNCTION: Converts a CSV (tab delimited) file to an Excel xlsx file. | |
| Copyright (c) 2016, Konrad Foerstner <[email protected]> | |
| Permission to use, copy, modify, and/or distribute this software for | |
| any purpose with or without fee is hereby granted, provided that the | |
| above copyright notice and this permission notice appear in all | |
| copies. |
OlderNewer