Kyle Niemeyer kyleniemeyer

Introducing JOSS: The Journal of Open Source Software

Abstract

This talk describes the motivation and progress of the Journal of Open Source Software (JOSS), a free, open-access journal designed to publish brief papers about research software. The primary purpose of JOSS is to enable developers of research software to receive citation credit equivalent to typical archival publications. Rather than a review of a lengthy software paper (including, e.g., methodology, validation, sample results), JOSS submissions undergo rigorous peer review of both the abstract and software itself, including documentation, tests, continuous integration, and licensing. The JOSS review process is modeled on the established approach of the rOpenSci collaboration. The entire submission and review process occurs openly on GitHub; papers not yet accepted remain visible and under review until the authors make appropriate changes for acceptance---unlike other journals, papers requiring major revision are not rejected. Since its pu

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	#!/usr/bin/env bash

	# Stolen from https://github.com/connorourke/crystal_torture/blob/master/paper/compile

	# Help text

	description="A bash script for compiling JOSS and JOSE papers locally";

	doc="compile [-j <journal>] [-d <doi>] [-v <volume>] [-i <issue>] [-p <page>]
	[-s <submitted>] [-u <published>] [-r <review>] [-g <repository>] [-a <archive>] FILE

	import numpy as np
	import cantera as ct

	def compare_models(model1, model2):
	"""Checks whether two Cantera models are equivalent.

	Parameters
	----------
	model1 : ct.Solution
	First Cantera model object

	travis_fold:start:worker_info
	[0K[33;1mWorker information[0m
	hostname: 1acc961a-574b-41e0-beb2-3b500b531de4@1.production-1-worker-org-gce-d1rp
	version: v6.2.0 https://github.com/travis-ci/worker/tree/5e5476e01646095f48eec13196fdb3faf8f5cbf7
	instance: travis-job-c994d1fc-1bd1-4d6c-95d5-9b0ff9dab4aa travis-ci-garnet-trusty-1512502259-986baf0 (via amqp)
	startup: 6.424396288s
	travis_fold:end:worker_info
	[0Ktravis_fold:start:system_info
	[0K[33;1mBuild system information[0m
	Build language: ruby

	---
	file-author:
	name: Kyle E Niemeyer
	ORCID: 0000-0003-4425-7097
	file-version: 0
	chemked-version: 1.0.0
	reference:
	doi: 10.1016/j.proci.2010.05.084
	authors:
	- name: Wei Liu

	---
	file-author:
	name: Morgan Mayer
	ORCID: 0000-0001-7137-5721
	file-version: (0,1)
	chemked-version: 0.0.1
	reference:
	doi: 10.1021/jp806464p
	authors:
	- name: Jeffrey T. Moss

	#include "timer.h"

	/** CUDA libraries */
	#include <cuda.h>
	#include <helper_cuda.h>

	__global__ void kernel () {

	}