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lcolladotor/current_r_packages.txt

Last active April 9, 2020 00:03
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current_r_packages.txt
> current <- dir(.libPaths())
> current
[1] "abind"
[2] "acepack"
[3] "ada"
[4] "additivityTests"
[5] "ade4"
[6] "admisc"
[7] "AER"
[8] "affy"
[9] "affyio"
[10] "AGD"
[11] "airway"
[12] "akima"
[13] "ALL"
[14] "alpineData"
[15] "amap"
[16] "AnalyzeFMRI"
[17] "animation"
[18] "annotate"
[19] "AnnotationDbi"
[20] "AnnotationFilter"
[21] "AnnotationForge"
[22] "AnnotationHub"
[23] "AnnotationHubData"
[24] "ape"
[25] "ari"
[26] "arm"
[27] "aroma.light"
[28] "arules"
[29] "AsioHeaders"
[30] "askpass"
[31] "assertive"
[32] "assertive.base"
[33] "assertive.code"
[34] "assertive.data"
[35] "assertive.data.uk"
[36] "assertive.data.us"
[37] "assertive.datetimes"
[38] "assertive.files"
[39] "assertive.matrices"
[40] "assertive.models"
[41] "assertive.numbers"
[42] "assertive.properties"
[43] "assertive.reflection"
[44] "assertive.sets"
[45] "assertive.strings"
[46] "assertive.types"
[47] "assertthat"
[48] "attempt"
[49] "available"
[50] "aws.polly"
[51] "aws.s3"
[52] "aws.signature"
[53] "backports"
[54] "ballgown"
[55] "base"
[56] "base64"
[57] "base64enc"
[58] "base64url"
[59] "BatchJobs"
[60] "batchtools"
[61] "BayesX"
[62] "baySeq"
[63] "BBmisc"
[64] "bbmle"
[65] "bdsmatrix"
[66] "beachmat"
[67] "beanplot"
[68] "BEDMatrix"
[69] "beeswarm"
[70] "benchmarkme"
[71] "benchmarkmeData"
[72] "betareg"
[73] "BgeeDB"
[74] "BH"
[75] "BiasedUrn"
[76] "bibtex"
[77] "biclust"
[78] "biglm"
[79] "bindr"
[80] "bindrcpp"
[81] "Biobase"
[82] "BiocCheck"
[83] "BiocFileCache"
[84] "BiocGenerics"
[85] "BiocManager"
[86] "BiocNeighbors"
[87] "BiocParallel"
[88] "BiocPkgTools"
[89] "BiocSingular"
[90] "BiocStyle"
[91] "BiocVersion"
[92] "biocViews"
[93] "BiocWorkflowTools"
[94] "biomaRt"
[95] "Biostrings"
[96] "biovizBase"
[97] "bit"
[98] "bit64"
[99] "bitops"
[100] "bladderbatch"
[101] "blob"
[102] "blockmodeling"
[103] "blogdown"
[104] "bookdown"
[105] "BoolNet"
[106] "boot"
[107] "brew"
[108] "brglm"
[109] "broom"
[110] "BrowserViz"
[111] "BSgenome"
[112] "BSgenome.Hsapiens.UCSC.hg19"
[113] "BSgenome.Hsapiens.UCSC.hg38"
[114] "bsseq"
[115] "bsseqData"
[116] "bumphunter"
[117] "c3net"
[118] "ca"
[119] "Cairo"
[120] "callr"
[121] "candisc"
[122] "car"
[123] "carData"
[124] "catdata"
[125] "Category"
[126] "caTools"
[127] "cba"
[128] "cellranger"
[129] "cem"
[130] "checkmate"
[131] "chron"
[132] "circlize"
[133] "CircStats"
[134] "class"
[135] "classInt"
[136] "cli"
[137] "clipr"
[138] "clisymbols"
[139] "clue"
[140] "cluster"
[141] "clusterExperiment"
[142] "clusterProfiler"
[143] "ClusterR"
[144] "clv"
[145] "cmprsk"
[146] "CNEr"
[147] "coda"
[148] "codetools"
[149] "coin"
[150] "collections"
[151] "colorout"
[152] "colorspace"
[153] "colourpicker"
[154] "combinat"
[155] "commonmark"
[156] "compiler"
[157] "ComplexHeatmap"
[158] "CompQuadForm"
[159] "config"
[160] "ConsensusClusterPlus"
[161] "coop"
[162] "corpcor"
[163] "corrplot"
[164] "covr"
[165] "cowplot"
[166] "coxme"
[167] "crayon"
[168] "crochet"
[169] "crosstalk"
[170] "csaw"
[171] "csvy"
[172] "curl"
[173] "cyclocomp"
[174] "d3heatmap"
[175] "DAAG"
[176] "data.table"
[177] "DataCombine"
[178] "datasets"
[179] "date"
[180] "DBI"
[181] "dbplyr"
[182] "dbscan"
[183] "debrowser"
[184] "debugme"
[185] "DEFormats"
[186] "DelayedArray"
[187] "DelayedMatrixStats"
[188] "deldir"
[189] "dendextend"
[190] "denstrip"
[191] "DEoptimR"
[192] "derfinder"
[193] "derfinderData"
[194] "derfinderHelper"
[195] "derfinderPlot"
[196] "Deriv"
[197] "desc"
[198] "descr"
[199] "DescTools"
[200] "DESeq"
[201] "DESeq2"
[202] "details"
[203] "devtools"
[204] "DiagrammeR"
[205] "dichromat"
[206] "DiffBind"
[207] "diffobj"
[208] "digest"
[209] "diptest"
[210] "DirichletMultinomial"
[211] "DMRScan"
[212] "dnet"
[213] "DO.db"
[214] "doBy"
[215] "dockerfiler"
[216] "doMC"
[217] "doParallel"
[218] "doRNG"
[219] "DOSE"
[220] "dotCall64"
[221] "downloader"
[222] "dplyr"
[223] "dqrng"
[224] "DT"
[225] "dtw"
[226] "dynamicTreeCut"
[227] "DynDoc"
[228] "dynlm"
[229] "e1071"
[230] "easyweb"
[231] "EBSeq"
[232] "EDASeq"
[233] "edge"
[234] "edgeR"
[235] "egg"
[236] "ellipse"
[237] "ellipsis"
[238] "emdbook"
[239] "emojifont"
[240] "enc"
[241] "energy"
[242] "enrichplot"
[243] "EnsDb.Hsapiens.v75"
[244] "EnsDb.Hsapiens.v79"
[245] "ensembldb"
[246] "EnvStats"
[247] "epivizr"
[248] "epivizrData"
[249] "epivizrServer"
[250] "europepmc"
[251] "evaluate"
[252] "evd"
[253] "exactRankTests"
[254] "ExperimentHub"
[255] "ExperimentHubData"
[256] "ExploreModelMatrix"
[257] "expm"
[258] "Fahrmeir"
[259] "fail"
[260] "fansi"
[261] "farver"
[262] "fastcluster"
[263] "fastICA"
[264] "fastmap"
[265] "fastmatch"
[266] "fcuk"
[267] "FD"
[268] "FDb.InfiniumMethylation.hg19"
[269] "fdrtool"
[270] "feather"
[271] "ff"
[272] "ffpe"
[273] "fgsea"
[274] "fields"
[275] "filehash"
[276] "fit.models"
[277] "fitdistrplus"
[278] "flexclust"
[279] "flexmix"
[280] "FNN"
[281] "forcats"
[282] "foreach"
[283] "foreign"
[284] "formatR"
[285] "formattable"
[286] "Formula"
[287] "forward"
[288] "fpc"
[289] "fracdiff"
[290] "fs"
[291] "futile.logger"
[292] "futile.options"
[293] "future"
[294] "future.apply"
[295] "gam"
[296] "GAMBoost"
[297] "gameofthrones"
[298] "gamlss"
[299] "gamlss.data"
[300] "gamlss.dist"
[301] "gargle"
[302] "gbm"
[303] "gbRd"
[304] "gcite"
[305] "gclus"
[306] "gdata"
[307] "gee"
[308] "geepack"
[309] "genefilter"
[310] "geneLenDataBase"
[311] "geneplotter"
[312] "generics"
[313] "GenomeInfoDb"
[314] "GenomeInfoDbData"
[315] "GenomicAlignments"
[316] "GenomicFeatures"
[317] "GenomicFiles"
[318] "GenomicRanges"
[319] "GenomicState"
[320] "geometry"
[321] "GEOquery"
[322] "getopt"
[323] "GetoptLong"
[324] "GGally"
[325] "ggbeeswarm"
[326] "ggbio"
[327] "ggdendro"
[328] "ggforce"
[329] "ggplot2"
[330] "ggplotify"
[331] "ggpubr"
[332] "ggraph"
[333] "ggrepel"
[334] "ggridges"
[335] "ggsci"
[336] "ggsignif"
[337] "ggthemes"
[338] "ggvis"
[339] "gh"
[340] "git2r"
[341] "glmmML"
[342] "glmnet"
[343] "GlobalOptions"
[344] "globals"
[345] "glue"
[346] "gmodels"
[347] "gmp"
[348] "gnm"
[349] "GO.db"
[350] "golem"
[351] "goodpractice"
[352] "googleAuthR"
[353] "googledrive"
[354] "googleLanguageR"
[355] "googlesheets"
[356] "googlesheets4"
[357] "googleVis"
[358] "GOSemSim"
[359] "goseq"
[360] "GOstats"
[361] "GPArotation"
[362] "gpclib"
[363] "gplots"
[364] "graph"
[365] "graphics"
[366] "graphite"
[367] "graphlayouts"
[368] "grDevices"
[369] "grid"
[370] "gridBase"
[371] "gridExtra"
[372] "gridGraphics"
[373] "GSE62944"
[374] "GSEABase"
[375] "gsl"
[376] "gtable"
[377] "gtools"
[378] "Gviz"
[379] "gWidgets"
[380] "gWidgetstcltk"
[381] "Harman"
[382] "harrypotter"
[383] "haven"
[384] "HDF5Array"
[385] "heatmaply"
[386] "heplots"
[387] "here"
[388] "hexbin"
[389] "HiddenMarkov"
[390] "highlight"
[391] "highr"
[392] "hmeasure"
[393] "Hmisc"
[394] "hms"
[395] "howmany"
[396] "HSAUR"
[397] "htmlTable"
[398] "htmltools"
[399] "htmlwidgets"
[400] "httpuv"
[401] "httr"
[402] "hunspell"
[403] "hwriter"
[404] "ica"
[405] "ideal"
[406] "igraph"
[407] "igraphdata"
[408] "IHW"
[409] "IlluminaHumanMethylation450kanno.ilmn12.hg19"
[410] "illuminaio"
[411] "impute"
[412] "ineq"
[413] "influenceR"
[414] "infotheo"
[415] "ini"
[416] "inline"
[417] "interactiveDisplayBase"
[418] "IRanges"
[419] "irlba"
[420] "irr"
[421] "isa2"
[422] "iSEE"
[423] "isoband"
[424] "ISOcodes"
[425] "ISwR"
[426] "iterators"
[427] "jackstraw"
[428] "jaffelab"
[429] "janeaustenr"
[430] "janitor"
[431] "jcolors"
[432] "jomo"
[433] "jpeg"
[434] "js4shiny"
[435] "jsonlite"
[436] "KEGGgraph"
[437] "KEGGREST"
[438] "kernlab"
[439] "KernSmooth"
[440] "kinship2"
[441] "km.ci"
[442] "KMsurv"
[443] "knitcitations"
[444] "knitr"
[445] "knitrBootstrap"
[446] "labeling"
[447] "laeken"
[448] "Lahman"
[449] "lambda.r"
[450] "languageserver"
[451] "lars"
[452] "later"
[453] "lattice"
[454] "latticeExtra"
[455] "lavaan"
[456] "lazyeval"
[457] "leaps"
[458] "leiden"
[459] "lfa"
[460] "libcoin"
[461] "LIBDpheno"
[462] "libdRSE"
[463] "lifecycle"
[464] "limma"
[465] "limSolve"
[466] "linprog"
[467] "lintr"
[468] "listenv"
[469] "listviewer"
[470] "lme4"
[471] "lmerTest"
[472] "lmtest"
[473] "lobstr"
[474] "locfdr"
[475] "locfit"
[476] "logspline"
[477] "lokern"
[478] "lpSolve"
[479] "lpsymphony"
[480] "lsei"
[481] "lubridate"
[482] "lumi"
[483] "magic"
[484] "magick"
[485] "magrittr"
[486] "mail"
[487] "mailR"
[488] "manipulate"
[489] "manipulateWidget"
[490] "mapdata"
[491] "mapproj"
[492] "maps"
[493] "maptools"
[494] "markdown"
[495] "maSigPro"
[496] "MASS"
[497] "Matching"
[498] "MatchIt"
[499] "matlab"
[500] "Matrix"
[501] "matrixcalc"
[502] "MatrixEQTL"
[503] "MatrixModels"
[504] "matrixStats"
[505] "maxLik"
[506] "maxlike"
[507] "maxstat"
[508] "mbkmeans"
[509] "mclust"
[510] "mcmc"
[511] "MCMCpack"
[512] "mem"
[513] "memoise"
[514] "metap"
[515] "methods"
[516] "methylumi"
[517] "Mfuzz"
[518] "mgcv"
[519] "mi"
[520] "mice"
[521] "microbenchmark"
[522] "mime"
[523] "minet"
[524] "minfi"
[525] "miniUI"
[526] "minqa"
[527] "misc3d"
[528] "miscTools"
[529] "mitml"
[530] "mitools"
[531] "mix"
[532] "mixtools"
[533] "mlbench"
[534] "mnormt"
[535] "mockery"
[536] "modelr"
[537] "modeltools"
[538] "mondate"
[539] "MPV"
[540] "mscstts"
[541] "multcomp"
[542] "multtest"
[543] "MuMIn"
[544] "munsell"
[545] "mutoss"
[546] "mvnormtest"
[547] "mvtnorm"
[548] "nleqslv"
[549] "nlme"
[550] "nloptr"
[551] "NLP"
[552] "NMF"
[553] "nnet"
[554] "nomnoml"
[555] "nor1mix"
[556] "nortest"
[557] "npsurv"
[558] "numDeriv"
[559] "nws"
[560] "nycflights13"
[561] "officer"
[562] "oompaBase"
[563] "OpenImageR"
[564] "openssl"
[565] "openxlsx"
[566] "optmatch"
[567] "optparse"
[568] "ordinal"
[569] "org.Cf.eg.db"
[570] "org.Hs.eg.db"
[571] "org.Mm.eg.db"
[572] "Organism.dplyr"
[573] "OrganismDbi"
[574] "oz"
[575] "packrat"
[576] "pagedown"
[577] "paletteer"
[578] "palr"
[579] "pals"
[580] "pamr"
[581] "pan"
[582] "parallel"
[583] "parmigene"
[584] "parsedate"
[585] "parsetools"
[586] "partitions"
[587] "party"
[588] "pasilla"
[589] "patchwork"
[590] "pathview"
[591] "pbapply"
[592] "pbivnorm"
[593] "pbkrtest"
[594] "pbmcapply"
[595] "pcaExplorer"
[596] "pcaPP"
[597] "perm"
[598] "permute"
[599] "pheatmap"
[600] "phylobase"
[601] "pillar"
[602] "pixmap"
[603] "pkgbuild"
[604] "pkgcond"
[605] "pkgconfig"
[606] "pkgdown"
[607] "pkgload"
[608] "pkgmaker"
[609] "PKI"
[610] "PKPDmodels"
[611] "plm"
[612] "plogr"
[613] "plotly"
[614] "plotrix"
[615] "plyr"
[616] "pmml"
[617] "pmmlTransformations"
[618] "png"
[619] "poLCA"
[620] "Polychrome"
[621] "polyclip"
[622] "polycor"
[623] "polyester"
[624] "polynom"
[625] "postlogic"
[626] "poweRlaw"
[627] "prabclus"
[628] "pracma"
[629] "praise"
[630] "preprocessCore"
[631] "prettyunits"
[632] "prismatic"
[633] "processx"
[634] "profileModel"
[635] "profvis"
[636] "progress"
[637] "promises"
[638] "ProtGenerics"
[639] "proto"
[640] "proxy"
[641] "pryr"
[642] "ps"
[643] "pscl"
[644] "psych"
[645] "psygenet2r"
[646] "purrr"
[647] "purrrogress"
[648] "PWMEnrich"
[649] "qap"
[650] "quadprog"
[651] "qualV"
[652] "quantmod"
[653] "quantreg"
[654] "qvalue"
[655] "qvcalc"
[656] "R.cache"
[657] "R.matlab"
[658] "R.methodsS3"
[659] "R.oo"
[660] "R.utils"
[661] "r2d3"
[662] "R2OpenBUGS"
[663] "R2WinBUGS"
[664] "R6"
[665] "rafalib"
[666] "randomForest"
[667] "randomForestSRC"
[668] "ranger"
[669] "RANN"
[670] "rappdirs"
[671] "raster"
[672] "rasterVis"
[673] "RBGL"
[674] "rBiopaxParser"
[675] "rbounds"
[676] "rcmdcheck"
[677] "RColorBrewer"
[678] "Rcpp"
[679] "RcppAnnoy"
[680] "RcppArmadillo"
[681] "RcppEigen"
[682] "RcppHNSW"
[683] "RcppParallel"
[684] "RcppProgress"
[685] "RcppRoll"
[686] "Rcsdp"
[687] "RCurl"
[688] "RCy3"
[689] "Rdpack"
[690] "rdrop2"
[691] "reactome.db"
[692] "ReactomePA"
[693] "readODS"
[694] "readr"
[695] "readxl"
[696] "recount"
[697] "recount.bwtool"
[698] "redoc"
[699] "RefManageR"
[700] "regionReport"
[701] "registry"
[702] "regutools"
[703] "relimp"
[704] "rematch"
[705] "rematch2"
[706] "remotes"
[707] "rentrez"
[708] "repr"
[709] "reprex"
[710] "reshape"
[711] "reshape2"
[712] "reticulate"
[713] "rex"
[714] "rfigshare"
[715] "rgenoud"
[716] "rgexf"
[717] "rgl"
[718] "Rgraphviz"
[719] "rhdf5"
[720] "Rhdf5lib"
[721] "Rhtslib"
[722] "rhub"
[723] "rintrojs"
[724] "rio"
[725] "RItools"
[726] "rJava"
[727] "rjson"
[728] "RJSONIO"
[729] "rlang"
[730] "rlecuyer"
[731] "RMariaDB"
[732] "rmarkdown"
[733] "rmatio"
[734] "rmeta"
[735] "rmote"
[736] "Rmpfr"
[737] "RMySQL"
[738] "RnBeads"
[739] "rncl"
[740] "RNeXML"
[741] "rngtools"
[742] "robust"
[743] "robustbase"
[744] "ROC"
[745] "ROCR"
[746] "Rook"
[747] "roxygen2"
[748] "roxygen2md"
[749] "rpart"
[750] "rpart.plot"
[751] "rpf"
[752] "rprojroot"
[753] "rrcov"
[754] "Rsamtools"
[755] "rsconnect"
[756] "RSpectra"
[757] "RSQLite"
[758] "rstudioapi"
[759] "Rsubread"
[760] "rsvd"
[761] "RSVGTipsDevice"
[762] "rtracklayer"
[763] "Rtsne"
[764] "rtweet"
[765] "RUnit"
[766] "rvcheck"
[767] "rversions"
[768] "rvest"
[769] "rworldmap"
[770] "rworldxtra"
[771] "RXKCD"
[772] "S4Vectors"
[773] "sampleSelection"
[774] "sandwich"
[775] "sankey"
[776] "scales"
[777] "scalreg"
[778] "scater"
[779] "scatterpie"
[780] "scatterplot3d"
[781] "scholar"
[782] "scico"
[783] "scran"
[784] "scrime"
[785] "scRNAseq"
[786] "sctransform"
[787] "SDMTools"
[788] "segmented"
[789] "selectr"
[790] "sem"
[791] "semTools"
[792] "sendmailR"
[793] "seqLogo"
[794] "seriation"
[795] "servr"
[796] "sessioninfo"
[797] "sets"
[798] "Seurat"
[799] "sfsmisc"
[800] "sgejobs"
[801] "SGSeq"
[802] "shape"
[803] "shapefiles"
[804] "shiny"
[805] "shinyAce"
[806] "shinyBS"
[807] "shinycsv"
[808] "shinydashboard"
[809] "shinyjs"
[810] "shinythemes"
[811] "shinyWidgets"
[812] "ShortRead"
[813] "showtext"
[814] "showtextdb"
[815] "siggenes"
[816] "signal"
[817] "simplegraph"
[818] "SingleCellExperiment"
[819] "sitmo"
[820] "slackr"
[821] "slam"
[822] "Sleuth2"
[823] "sm"
[824] "sn"
[825] "snakecase"
[826] "snm"
[827] "snow"
[828] "SnowballC"
[829] "snowfall"
[830] "softImpute"
[831] "sourcetools"
[832] "sp"
[833] "spam"
[834] "SparseM"
[835] "spatial"
[836] "spatialLIBD"
[837] "spData"
[838] "spelling"
[839] "splines"
[840] "SRAdb"
[841] "stabs"
[842] "StanHeaders"
[843] "statmod"
[844] "stats"
[845] "stats4"
[846] "stopwords"
[847] "stringdist"
[848] "stringi"
[849] "stringr"
[850] "strucchange"
[851] "styler"
[852] "SummarizedExperiment"
[853] "SuppDists"
[854] "supraHex"
[855] "survey"
[856] "survival"
[857] "survminer"
[858] "survMisc"
[859] "Sushi"
[860] "sva"
[861] "svd"
[862] "svgPanZoom"
[863] "sys"
[864] "sysfonts"
[865] "systemfit"
[866] "systemPipeR"
[867] "TCGAbiolinks"
[868] "tcltk"
[869] "tensorA"
[870] "testextra"
[871] "testit"
[872] "testthat"
[873] "texPreview"
[874] "text2speech"
[875] "TFBSTools"
[876] "TFisher"
[877] "TFMPvalue"
[878] "TH.data"
[879] "threejs"
[880] "tibble"
[881] "tidygraph"
[882] "tidyr"
[883] "tidyselect"
[884] "tidytext"
[885] "tidyverse"
[886] "tiff"
[887] "timeDate"
[888] "timeSeries"
[889] "tinytex"
[890] "tis"
[891] "tkrplot"
[892] "tkWidgets"
[893] "tm"
[894] "tokenizers"
[895] "tools"
[896] "topGO"
[897] "translations"
[898] "travis"
[899] "tree"
[900] "triebeard"
[901] "trimcluster"
[902] "tripack"
[903] "truncreg"
[904] "TSA"
[905] "tseries"
[906] "tsne"
[907] "TSP"
[908] "TTR"
[909] "tuber"
[910] "tufte"
[911] "tuneR"
[912] "tweenr"
[913] "TxDb.Hsapiens.UCSC.hg19.knownGene"
[914] "TxDb.Hsapiens.UCSC.hg38.knownGene"
[915] "TxDb.Mmusculus.UCSC.mm10.knownGene"
[916] "tximport"
[917] "ucminf"
[918] "udapi"
[919] "udunits2"
[920] "units"
[921] "UpSetR"
[922] "urca"
[923] "urltools"
[924] "uroot"
[925] "usethis"
[926] "utf8"
[927] "utils"
[928] "uuid"
[929] "uwot"
[930] "V8"
[931] "VariantAnnotation"
[932] "vcd"
[933] "vcdExtra"
[934] "vctrs"
[935] "vegan"
[936] "venn"
[937] "VennDiagram"
[938] "verification"
[939] "VGAM"
[940] "VGAMdata"
[941] "VIM"
[942] "vipor"
[943] "viridis"
[944] "viridisLite"
[945] "visNetwork"
[946] "vsn"
[947] "wateRmelon"
[948] "webshot"
[949] "websocket"
[950] "WGCNA"
[951] "whisker"
[952] "whoami"
[953] "widgetTools"
[954] "wiggleplotr"
[955] "withr"
[956] "wordcloud"
[957] "xaringan"
[958] "xfun"
[959] "xlsx"
[960] "xlsxjars"
[961] "XML"
[962] "xml2"
[963] "xmlparsedata"
[964] "xopen"
[965] "xptr"
[966] "xtable"
[967] "xts"
[968] "XVector"
[969] "yaml"
[970] "yesno"
[971] "zeallot"
[972] "zebrafishRNASeq"
[973] "zinbwave"
[974] "zip"
[975] "zipcode"
[976] "zlibbioc"
[977] "zoo"
## Only semTools failed (loads well in a separate session) as
## well as translation (an R-core pkg that is not really a pkg)
> sapply(current, library, character.only = TRUE)
> options(width = 200)
> sessioninfo::session_info()
─ Session info ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.0.0 alpha (2020-04-07 r78176)
os macOS Catalina 10.15.4
system x86_64, darwin17.0
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz America/New_York
date 2020-04-08
─ Packages ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date lib source
abind * 1.4-5 2016-07-21 [1] CRAN (R 4.0.0)
acepack * 1.4.1 2016-10-29 [1] CRAN (R 4.0.0)
ada * 2.0-5 2016-05-13 [1] CRAN (R 4.0.0)
additivityTests * 1.1-4 2014-12-24 [1] CRAN (R 4.0.0)
ade4 * 1.7-15 2020-02-13 [1] CRAN (R 4.0.0)
admisc * 0.7 2020-03-31 [1] CRAN (R 4.0.0)
AER * 1.2-9 2020-02-06 [1] CRAN (R 4.0.0)
affy * 1.65.1 2020-04-07 [1] Bioconductor
affyio * 1.57.0 2020-04-07 [1] Bioconductor
AGD * 0.39 2018-05-29 [1] CRAN (R 4.0.0)
airway * 1.7.0 2019-10-31 [1] Bioconductor
akima * 0.6-2 2016-12-20 [1] CRAN (R 4.0.0)
ALL * 1.29.0 2019-10-31 [1] Bioconductor
alpineData * 1.13.0 2019-10-31 [1] Bioconductor
amap * 0.8-18 2019-12-12 [1] CRAN (R 4.0.0)
AnalyzeFMRI * 1.1-21 2019-11-10 [1] CRAN (R 4.0.0)
animation * 2.6 2018-12-11 [1] CRAN (R 4.0.0)
annotate * 1.65.1 2020-04-07 [1] Bioconductor
AnnotationDbi * 1.49.1 2020-04-07 [1] Bioconductor
AnnotationFilter * 1.11.0 2020-04-07 [1] Bioconductor
AnnotationForge * 1.29.2 2020-04-07 [1] Bioconductor
AnnotationHub * 2.19.9 2020-04-07 [1] Bioconductor
AnnotationHubData * 1.17.5 2020-04-07 [1] Bioconductor
ape * 5.3 2019-03-17 [1] CRAN (R 4.0.0)
ari * 0.3.5 2020-02-08 [1] CRAN (R 4.0.0)
arm * 1.10-1 2018-04-13 [1] CRAN (R 4.0.0)
aroma.light * 3.17.1 2020-04-07 [1] Bioconductor
arules * 1.6-5 2020-04-04 [1] CRAN (R 4.0.0)
AsioHeaders * 1.12.2-1 2020-03-11 [1] CRAN (R 4.0.0)
askpass * 1.1 2019-01-13 [1] CRAN (R 4.0.0)
assertive * 0.3-5 2016-12-31 [1] CRAN (R 4.0.0)
assertive.base * 0.0-7 2016-12-30 [1] CRAN (R 4.0.0)
assertive.code * 0.0-3 2018-10-21 [1] CRAN (R 4.0.0)
assertive.data * 0.0-3 2018-11-21 [1] CRAN (R 4.0.0)
assertive.data.uk * 0.0-2 2018-10-21 [1] CRAN (R 4.0.0)
assertive.data.us * 0.0-2 2018-10-21 [1] CRAN (R 4.0.0)
assertive.datetimes * 0.0-2 2016-05-10 [1] CRAN (R 4.0.0)
assertive.files * 0.0-2 2016-05-10 [1] CRAN (R 4.0.0)
assertive.matrices * 0.0-2 2018-11-20 [1] CRAN (R 4.0.0)
assertive.models * 0.0-2 2018-10-21 [1] CRAN (R 4.0.0)
assertive.numbers * 0.0-2 2016-05-09 [1] CRAN (R 4.0.0)
assertive.properties * 0.0-4 2016-12-30 [1] CRAN (R 4.0.0)
assertive.reflection * 0.0-4 2016-12-30 [1] CRAN (R 4.0.0)
assertive.sets * 0.0-3 2016-12-30 [1] CRAN (R 4.0.0)
assertive.strings * 0.0-3 2016-05-10 [1] CRAN (R 4.0.0)
assertive.types * 0.0-3 2016-12-30 [1] CRAN (R 4.0.0)
assertthat * 0.2.1 2019-03-21 [1] CRAN (R 4.0.0)
attempt * 0.3.0 2019-04-08 [1] CRAN (R 4.0.0)
available * 1.0.4 2019-07-19 [1] CRAN (R 4.0.0)
aws.polly * 0.1.5 2020-03-11 [1] CRAN (R 4.0.0)
aws.s3 * 0.3.21 2020-04-07 [1] CRAN (R 4.0.0)
aws.signature * 0.5.2 2019-08-08 [1] CRAN (R 4.0.0)
backports * 1.1.6 2020-04-05 [1] CRAN (R 4.0.0)
ballgown * 2.19.3 2020-04-07 [1] Bioconductor
base64 * 2.0 2016-05-10 [1] CRAN (R 4.0.0)
base64enc * 0.1-3 2015-07-28 [1] CRAN (R 4.0.0)
base64url * 1.4 2018-05-14 [1] CRAN (R 4.0.0)
BatchJobs * 1.8 2019-05-14 [1] CRAN (R 4.0.0)
batchtools * 0.9.13 2020-03-19 [1] CRAN (R 4.0.0)
BayesX * 0.3-1 2019-08-24 [1] CRAN (R 4.0.0)
baySeq * 2.21.0 2020-04-07 [1] Bioconductor
BBmisc * 1.11 2017-03-10 [1] CRAN (R 4.0.0)
bbmle * 1.0.23.1 2020-02-03 [1] CRAN (R 4.0.0)
bdsmatrix * 1.3-4 2020-01-13 [1] CRAN (R 4.0.0)
beachmat * 2.3.2 2020-04-07 [1] Bioconductor
beanplot * 1.2 2014-09-19 [1] CRAN (R 4.0.0)
BEDMatrix * 2.0.2 2020-03-11 [1] CRAN (R 4.0.0)
beeswarm * 0.2.3 2016-04-25 [1] CRAN (R 4.0.0)
benchmarkme * 1.0.3 2019-11-09 [1] CRAN (R 4.0.0)
benchmarkmeData * 1.0.3 2019-11-02 [1] CRAN (R 4.0.0)
betareg * 3.1-3 2020-02-03 [1] CRAN (R 4.0.0)
BgeeDB * 2.13.1 2020-04-07 [1] Bioconductor
BH * 1.72.0-3 2020-01-08 [1] CRAN (R 4.0.0)
BiasedUrn * 1.07 2015-12-28 [1] CRAN (R 4.0.0)
bibtex * 0.4.2.2 2020-01-02 [1] CRAN (R 4.0.0)
biclust * 2.0.2 2020-02-04 [1] CRAN (R 4.0.0)
biglm * 0.9-1 2013-05-16 [1] CRAN (R 4.0.0)
bindr * 0.1.1 2018-03-13 [1] CRAN (R 4.0.0)
bindrcpp * 0.2.2 2018-03-29 [1] CRAN (R 4.0.0)
Biobase * 2.47.3 2020-04-07 [1] Bioconductor
BiocCheck * 1.23.3 2020-04-07 [1] Bioconductor
BiocFileCache * 1.11.4 2020-04-07 [1] Bioconductor
BiocGenerics * 0.33.3 2020-04-07 [1] Bioconductor
BiocManager * 1.30.10 2019-11-16 [1] CRAN (R 4.0.0)
BiocNeighbors * 1.5.2 2020-04-07 [1] Bioconductor
BiocParallel * 1.21.2 2020-04-07 [1] Bioconductor
BiocPkgTools * 1.5.9 2020-04-07 [1] Bioconductor
BiocSingular * 1.3.2 2020-04-07 [1] Bioconductor
BiocStyle * 2.15.6 2020-04-07 [1] Bioconductor
BiocVersion * 3.11.1 2020-04-07 [1] Bioconductor
biocViews * 1.55.7 2020-04-07 [1] Bioconductor
BiocWorkflowTools * 1.13.2 2020-04-07 [1] Bioconductor
biomaRt * 2.43.5 2020-04-07 [1] Bioconductor
Biostrings * 2.55.7 2020-04-07 [1] Bioconductor
biovizBase * 1.35.1 2020-04-07 [1] Bioconductor
bit * 1.1-15.2 2020-02-10 [1] CRAN (R 4.0.0)
bit64 * 0.9-7 2017-05-08 [1] CRAN (R 4.0.0)
bitops * 1.0-6 2013-08-17 [1] CRAN (R 4.0.0)
bladderbatch * 1.25.0 2019-10-31 [1] Bioconductor
blob * 1.2.1 2020-01-20 [1] CRAN (R 4.0.0)
blockmodeling * 0.3.6 2020-02-15 [1] CRAN (R 4.0.0)
blogdown * 0.18 2020-03-04 [1] CRAN (R 4.0.0)
bookdown * 0.18 2020-03-05 [1] CRAN (R 4.0.0)
BoolNet * 2.1.5 2019-04-16 [1] CRAN (R 4.0.0)
boot * 1.3-24 2019-12-20 [1] CRAN (R 4.0.0)
brew * 1.0-6 2011-04-13 [1] CRAN (R 4.0.0)
brglm * 0.6.2 2019-04-02 [1] CRAN (R 4.0.0)
broom * 0.5.5 2020-02-29 [1] CRAN (R 4.0.0)
BrowserViz * 2.9.1 2020-04-07 [1] Bioconductor
BSgenome * 1.55.4 2020-04-07 [1] Bioconductor
BSgenome.Hsapiens.UCSC.hg19 * 1.4.3 2020-04-08 [1] Bioconductor
BSgenome.Hsapiens.UCSC.hg38 * 1.4.3 2020-04-08 [1] Bioconductor
bsseq * 1.23.2 2020-04-07 [1] Bioconductor
bsseqData * 0.25.0 2019-10-31 [1] Bioconductor
bumphunter * 1.29.0 2020-04-07 [1] Bioconductor
c3net * 1.1.1 2012-07-23 [1] CRAN (R 4.0.0)
ca * 0.71.1 2020-01-24 [1] CRAN (R 4.0.0)
Cairo * 1.5-11 2020-03-09 [1] CRAN (R 4.0.0)
callr * 3.4.3 2020-03-28 [1] CRAN (R 4.0.0)
candisc * 0.8-0 2017-09-19 [1] CRAN (R 4.0.0)
car * 3.0-7 2020-03-11 [1] CRAN (R 4.0.0)
carData * 3.0-3 2019-11-16 [1] CRAN (R 4.0.0)
catdata * 1.2.2 2020-02-07 [1] CRAN (R 4.0.0)
Category * 2.53.1 2020-04-07 [1] Bioconductor
caTools * 1.18.0 2020-01-17 [1] CRAN (R 4.0.0)
cba * 0.2-21 2019-04-18 [1] CRAN (R 4.0.0)
cellranger * 1.1.0 2016-07-27 [1] CRAN (R 4.0.0)
cem * 1.1.19 2018-04-12 [1] CRAN (R 4.0.0)
checkmate * 2.0.0 2020-02-06 [1] CRAN (R 4.0.0)
chron * 2.3-55 2020-02-02 [1] CRAN (R 4.0.0)
circlize * 0.4.8 2019-09-08 [1] CRAN (R 4.0.0)
CircStats * 0.2-6 2018-07-01 [1] CRAN (R 4.0.0)
class * 7.3-16 2020-03-25 [1] CRAN (R 4.0.0)
classInt * 0.4-3 2020-04-07 [1] CRAN (R 4.0.0)
cli * 2.0.2 2020-02-28 [1] CRAN (R 4.0.0)
clipr * 0.7.0 2019-07-23 [1] CRAN (R 4.0.0)
clisymbols * 1.2.0 2017-05-21 [1] CRAN (R 4.0.0)
clue * 0.3-57 2019-02-25 [1] CRAN (R 4.0.0)
cluster * 2.1.0 2019-06-19 [1] CRAN (R 4.0.0)
clusterExperiment * 2.7.0 2019-10-29 [1] Bioconductor
clusterProfiler * 3.15.4 2020-04-07 [1] Bioconductor
ClusterR * 1.2.1 2019-11-29 [1] CRAN (R 4.0.0)
clv * 0.3-2.2 2020-03-17 [1] CRAN (R 4.0.0)
cmprsk * 2.2-9 2019-10-09 [1] CRAN (R 4.0.0)
CNEr * 1.23.0 2020-04-07 [1] Bioconductor
coda * 0.19-3 2019-07-05 [1] CRAN (R 4.0.0)
codetools * 0.2-16 2018-12-24 [1] CRAN (R 4.0.0)
coin * 1.3-1 2019-08-28 [1] CRAN (R 4.0.0)
collections * 0.2.5 2020-03-15 [1] CRAN (R 4.0.0)
colorout * 1.2-2 2020-03-16 [1] Github (jalvesaq/colorout@726d681)
colorspace * 1.4-1 2019-03-18 [1] CRAN (R 4.0.0)
colourpicker * 1.0 2017-09-27 [1] CRAN (R 4.0.0)
combinat * 0.0-8 2012-10-29 [1] CRAN (R 4.0.0)
commonmark * 1.7 2018-12-01 [1] CRAN (R 4.0.0)
ComplexHeatmap * 2.3.4 2020-04-07 [1] Bioconductor
CompQuadForm * 1.4.3 2017-04-12 [1] CRAN (R 4.0.0)
config * 0.3 2018-03-27 [1] CRAN (R 4.0.0)
ConsensusClusterPlus * 1.51.0 2019-10-29 [1] Bioconductor
coop * 0.6-2 2019-04-22 [1] CRAN (R 4.0.0)
corpcor * 1.6.9 2017-04-01 [1] CRAN (R 4.0.0)
corrplot * 0.84 2017-10-16 [1] CRAN (R 4.0.0)
covr * 3.5.0 2020-03-06 [1] CRAN (R 4.0.0)
cowplot * 1.0.0 2019-07-11 [1] CRAN (R 4.0.0)
coxme * 2.2-16 2020-01-14 [1] CRAN (R 4.0.0)
crayon * 1.3.4 2017-09-16 [1] CRAN (R 4.0.0)
crochet * 2.2.0 2019-06-13 [1] CRAN (R 4.0.0)
crosstalk * 1.1.0.1 2020-03-13 [1] CRAN (R 4.0.0)
csaw * 1.21.4 2020-04-07 [1] Bioconductor
csvy * 0.3.0 2018-08-01 [1] CRAN (R 4.0.0)
curl * 4.3 2019-12-02 [1] CRAN (R 4.0.0)
cyclocomp * 1.1.0 2016-09-10 [1] CRAN (R 4.0.0)
d3heatmap * 0.6.1.2 2018-02-01 [1] CRAN (R 4.0.0)
DAAG * 1.24 2020-03-10 [1] CRAN (R 4.0.0)
data.table * 1.12.8 2019-12-09 [1] CRAN (R 4.0.0)
DataCombine * 0.2.21 2016-04-13 [1] CRAN (R 4.0.0)
date * 1.2-39 2020-02-05 [1] CRAN (R 4.0.0)
DBI * 1.1.0 2019-12-15 [1] CRAN (R 4.0.0)
dbplyr * 1.4.2 2019-06-17 [1] CRAN (R 4.0.0)
dbscan * 1.1-5 2019-10-23 [1] CRAN (R 4.0.0)
debrowser * 1.15.2 2020-04-07 [1] Bioconductor
debugme * 1.1.0 2017-10-22 [1] CRAN (R 4.0.0)
DEFormats * 1.15.0 2020-04-07 [1] Bioconductor
DelayedArray * 0.13.10 2020-04-07 [1] Bioconductor
DelayedMatrixStats * 1.9.1 2020-04-07 [1] Bioconductor
deldir * 0.1-25 2020-02-03 [1] CRAN (R 4.0.0)
dendextend * 1.13.4 2020-02-28 [1] CRAN (R 4.0.0)
denstrip * 1.5.4 2018-03-18 [1] CRAN (R 4.0.0)
DEoptimR * 1.0-8 2016-11-19 [1] CRAN (R 4.0.0)
derfinder * 1.21.0 2020-04-07 [1] Bioconductor
derfinderData * 2.5.0 2019-10-31 [1] Bioconductor
derfinderHelper * 1.21.0 2020-04-07 [1] Bioconductor
derfinderPlot * 1.21.0 2020-04-07 [1] Bioconductor
Deriv * 4.0 2019-12-10 [1] CRAN (R 4.0.0)
desc * 1.2.0 2018-05-01 [1] CRAN (R 4.0.0)
descr * 1.1.4 2018-01-19 [1] CRAN (R 4.0.0)
DescTools * 0.99.34 2020-03-12 [1] CRAN (R 4.0.0)
DESeq * 1.39.0 2019-10-29 [1] Bioconductor
DESeq2 * 1.27.29 2020-04-07 [1] Bioconductor
details * 0.2.1 2020-01-12 [1] CRAN (R 4.0.0)
devtools * 2.2.2 2020-02-17 [1] CRAN (R 4.0.0)
DiagrammeR * 1.0.5 2020-01-16 [1] CRAN (R 4.0.0)
dichromat * 2.0-0 2013-01-24 [1] CRAN (R 4.0.0)
DiffBind * 2.15.2 2020-04-07 [1] Bioconductor
diffobj * 0.2.4 2020-03-20 [1] CRAN (R 4.0.0)
digest * 0.6.25 2020-02-23 [1] CRAN (R 4.0.0)
diptest * 0.75-7 2016-12-05 [1] CRAN (R 4.0.0)
DirichletMultinomial * 1.29.0 2020-04-07 [1] Bioconductor
DMRScan * 1.9.3 2020-04-07 [1] Bioconductor
dnet * 1.1.7 2020-02-20 [1] CRAN (R 4.0.0)
DO.db * 2.9 2020-04-08 [1] Bioconductor
doBy * 4.6.5 2020-02-21 [1] CRAN (R 4.0.0)
dockerfiler * 0.1.3 2019-03-19 [1] CRAN (R 4.0.0)
doMC * 1.3.6 2019-07-27 [1] CRAN (R 4.0.0)
doParallel * 1.0.15 2019-08-02 [1] CRAN (R 4.0.0)
doRNG * 1.8.2 2020-01-27 [1] CRAN (R 4.0.0)
DOSE * 3.13.2 2020-04-07 [1] Bioconductor
dotCall64 * 1.0-0 2018-07-30 [1] CRAN (R 4.0.0)
downloader * 0.4 2015-07-09 [1] CRAN (R 4.0.0)
dplyr * 0.8.5 2020-03-07 [1] CRAN (R 4.0.0)
dqrng * 0.2.1 2019-05-17 [1] CRAN (R 4.0.0)
DT * 0.13 2020-03-23 [1] CRAN (R 4.0.0)
dtw * 1.21-3 2019-09-01 [1] CRAN (R 4.0.0)
dynamicTreeCut * 1.63-1 2016-03-11 [1] CRAN (R 4.0.0)
DynDoc * 1.65.0 2020-04-07 [1] Bioconductor
dynlm * 0.3-6 2019-01-06 [1] CRAN (R 4.0.0)
e1071 * 1.7-3 2019-11-26 [1] CRAN (R 4.0.0)
easyweb * 0.99.0 2020-04-08 [1] Github (comunidadbioinfo/easyweb@6b97a6a)
EBSeq * 1.27.0 2020-04-07 [1] Bioconductor
EDASeq * 2.21.2 2020-04-07 [1] Bioconductor
edge * 2.19.0 2020-04-07 [1] Bioconductor
edgeR * 3.29.1 2020-04-07 [1] Bioconductor
egg * 0.4.5 2019-07-13 [1] CRAN (R 4.0.0)
ellipse * 0.4.1 2018-01-05 [1] CRAN (R 4.0.0)
ellipsis * 0.3.0 2019-09-20 [1] CRAN (R 4.0.0)
emdbook * 1.3.12 2020-02-19 [1] CRAN (R 4.0.0)
emojifont * 0.5.3 2019-12-12 [1] CRAN (R 4.0.0)
enc * 0.2.2 2019-12-19 [1] CRAN (R 4.0.0)
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spatial * 7.3-11 2015-08-30 [1] CRAN (R 4.0.0)
spatialLIBD * 0.99.12 2020-04-07 [1] Github (LieberInstitute/spatialLIBD@a2c0d08)
spData * 0.3.5 2020-04-06 [1] CRAN (R 4.0.0)
spelling * 2.1 2019-03-11 [1] CRAN (R 4.0.0)
SRAdb * 1.49.1 2020-04-07 [1] Bioconductor
stabs * 0.6-3 2017-07-19 [1] CRAN (R 4.0.0)
StanHeaders * 2.19.2 2020-02-11 [1] CRAN (R 4.0.0)
statmod * 1.4.34 2020-02-17 [1] CRAN (R 4.0.0)
stopwords * 1.0 2019-07-24 [1] CRAN (R 4.0.0)
stringdist * 0.9.5.5 2019-10-21 [1] CRAN (R 4.0.0)
stringi * 1.4.6 2020-02-17 [1] CRAN (R 4.0.0)
stringr * 1.4.0 2019-02-10 [1] CRAN (R 4.0.0)
strucchange * 1.5-2 2019-10-12 [1] CRAN (R 4.0.0)
styler * 1.3.2 2020-02-23 [1] CRAN (R 4.0.0)
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supraHex * 1.25.1 2020-04-07 [1] Bioconductor
survey * 4.0 2020-04-03 [1] CRAN (R 4.0.0)
survival * 3.1-11 2020-03-07 [1] CRAN (R 4.0.0)
survminer * 0.4.6 2019-09-03 [1] CRAN (R 4.0.0)
survMisc * 0.5.5 2018-07-05 [1] CRAN (R 4.0.0)
Sushi * 1.25.0 2020-04-07 [1] Bioconductor
sva * 3.35.2 2020-04-07 [1] Bioconductor
svd * 0.5 2019-08-19 [1] CRAN (R 4.0.0)
svgPanZoom * 0.3.4 2020-02-15 [1] CRAN (R 4.0.0)
sys * 3.3 2019-08-21 [1] CRAN (R 4.0.0)
sysfonts * 0.8 2018-10-11 [1] CRAN (R 4.0.0)
systemfit * 1.1-24 2019-12-09 [1] CRAN (R 4.0.0)
systemPipeR * 1.21.6 2020-04-07 [1] Bioconductor
TCGAbiolinks * 2.15.3 2019-12-17 [1] Bioconductor
tensorA * 0.36.1 2018-07-29 [1] CRAN (R 4.0.0)
testextra * 0.1.0.1 2019-12-18 [1] CRAN (R 4.0.0)
testit * 0.11 2019-11-12 [1] CRAN (R 4.0.0)
testthat * 2.3.2 2020-03-02 [1] CRAN (R 4.0.0)
texPreview * 1.4.4 2020-02-16 [1] CRAN (R 4.0.0)
text2speech * 0.2.10 2020-02-13 [1] CRAN (R 4.0.0)
TFBSTools * 1.25.2 2020-04-07 [1] Bioconductor
TFisher * 0.2.0 2018-03-21 [1] CRAN (R 4.0.0)
TFMPvalue * 0.0.8 2018-05-16 [1] CRAN (R 4.0.0)
TH.data * 1.0-10 2019-01-21 [1] CRAN (R 4.0.0)
threejs * 0.3.3 2020-01-21 [1] CRAN (R 4.0.0)
tibble * 3.0.0 2020-03-30 [1] CRAN (R 4.0.0)
tidygraph * 1.1.2 2019-02-18 [1] CRAN (R 4.0.0)
tidyr * 1.0.2 2020-01-24 [1] CRAN (R 4.0.0)
tidyselect * 1.0.0 2020-01-27 [1] CRAN (R 4.0.0)
tidytext * 0.2.3 2020-03-04 [1] CRAN (R 4.0.0)
tidyverse * 1.3.0 2019-11-21 [1] CRAN (R 4.0.0)
tiff * 0.1-5 2013-09-04 [1] CRAN (R 4.0.0)
timeDate * 3043.102 2018-02-21 [1] CRAN (R 4.0.0)
timeSeries * 3062.100 2020-01-24 [1] CRAN (R 4.0.0)
tinytex * 0.21 2020-03-31 [1] CRAN (R 4.0.0)
tis * 1.38 2020-02-10 [1] CRAN (R 4.0.0)
tkrplot * 0.0-24 2018-07-19 [1] CRAN (R 4.0.0)
tkWidgets * 1.65.0 2020-04-07 [1] Bioconductor
tm * 0.7-7 2019-12-12 [1] CRAN (R 4.0.0)
tokenizers * 0.2.1 2018-03-29 [1] CRAN (R 4.0.0)
topGO * 2.39.1 2020-04-07 [1] Bioconductor
travis * 0.3.0.9003 2020-04-08 [1] Github (ropenscilabs/travis@ff7bd83)
tree * 1.0-40 2019-04-26 [1] CRAN (R 4.0.0)
triebeard * 0.3.0 2016-08-04 [1] CRAN (R 4.0.0)
trimcluster * 0.1-5 2020-02-09 [1] CRAN (R 4.0.0)
tripack * 1.3-9 2020-03-06 [1] CRAN (R 4.0.0)
truncreg * 0.2-5 2018-08-18 [1] CRAN (R 4.0.0)
TSA * 1.2 2018-06-30 [1] CRAN (R 4.0.0)
tseries * 0.10-47 2019-06-05 [1] CRAN (R 4.0.0)
tsne * 0.1-3 2016-07-15 [1] CRAN (R 4.0.0)
TSP * 1.1-9 2020-02-21 [1] CRAN (R 4.0.0)
TTR * 0.23-6 2019-12-15 [1] CRAN (R 4.0.0)
tuber * 0.9.8 2019-06-26 [1] CRAN (R 4.0.0)
tufte * 0.5 2019-05-12 [1] CRAN (R 4.0.0)
tuneR * 1.3.3 2018-07-08 [1] CRAN (R 4.0.0)
tweenr * 1.0.1 2018-12-14 [1] CRAN (R 4.0.0)
TxDb.Hsapiens.UCSC.hg19.knownGene * 3.2.2 2020-04-08 [1] Bioconductor
TxDb.Hsapiens.UCSC.hg38.knownGene * 3.10.0 2020-04-08 [1] Bioconductor
TxDb.Mmusculus.UCSC.mm10.knownGene * 3.10.0 2020-04-08 [1] Bioconductor
tximport * 1.15.13 2020-04-07 [1] Bioconductor
ucminf * 1.1-4 2016-08-18 [1] CRAN (R 4.0.0)
udapi * 0.1.3 2018-08-18 [1] CRAN (R 4.0.0)
udunits2 * 0.13 2016-11-17 [1] CRAN (R 4.0.0)
units * 0.6-6 2020-03-16 [1] CRAN (R 4.0.0)
UpSetR * 1.4.0 2019-05-22 [1] CRAN (R 4.0.0)
urca * 1.3-0 2016-09-06 [1] CRAN (R 4.0.0)
urltools * 1.7.3 2019-04-14 [1] CRAN (R 4.0.0)
uroot * 2.1-0 2019-08-19 [1] CRAN (R 4.0.0)
usethis * 1.5.1 2019-07-04 [1] CRAN (R 4.0.0)
utf8 * 1.1.4 2018-05-24 [1] CRAN (R 4.0.0)
uuid * 0.1-4 2020-02-26 [1] CRAN (R 4.0.0)
uwot * 0.1.8 2020-03-16 [1] CRAN (R 4.0.0)
V8 * 3.0.2 2020-03-14 [1] CRAN (R 4.0.0)
VariantAnnotation * 1.33.2 2020-03-18 [1] Bioconductor
vcd * 1.4-7 2020-04-02 [1] CRAN (R 4.0.0)
vcdExtra * 0.7-1 2017-09-29 [1] CRAN (R 4.0.0)
vctrs * 0.2.4 2020-03-10 [1] CRAN (R 4.0.0)
vegan * 2.5-6 2019-09-01 [1] CRAN (R 4.0.0)
venn * 1.9 2020-01-10 [1] CRAN (R 4.0.0)
VennDiagram * 1.6.20 2018-03-28 [1] CRAN (R 4.0.0)
verification * 1.42 2015-07-15 [1] CRAN (R 4.0.0)
VGAM * 1.1-2 2019-11-21 [1] CRAN (R 4.0.0)
VGAMdata * 1.0-3 2017-01-10 [1] CRAN (R 4.0.0)
VIM * 5.1.1 2020-03-10 [1] CRAN (R 4.0.0)
vipor * 0.4.5 2017-03-22 [1] CRAN (R 4.0.0)
viridis * 0.5.1 2018-03-29 [1] CRAN (R 4.0.0)
viridisLite * 0.3.0 2018-02-01 [1] CRAN (R 4.0.0)
visNetwork * 2.0.9 2019-12-06 [1] CRAN (R 4.0.0)
vsn * 3.55.0 2020-04-07 [1] Bioconductor
wateRmelon * 1.31.0 2020-04-07 [1] Bioconductor
webshot * 0.5.2 2019-11-22 [1] CRAN (R 4.0.0)
websocket * 1.1.0 2019-08-08 [1] CRAN (R 4.0.0)
WGCNA * 1.69 2020-02-28 [1] CRAN (R 4.0.0)
whisker * 0.4 2019-08-28 [1] CRAN (R 4.0.0)
whoami * 1.3.0 2019-03-19 [1] CRAN (R 4.0.0)
widgetTools * 1.65.0 2020-04-07 [1] Bioconductor
wiggleplotr * 1.11.1 2020-04-07 [1] Bioconductor
withr * 2.1.2 2018-03-15 [1] CRAN (R 4.0.0)
wordcloud * 2.6 2018-08-24 [1] CRAN (R 4.0.0)
xaringan * 0.16 2020-03-31 [1] CRAN (R 4.0.0)
xfun * 0.12 2020-01-13 [1] CRAN (R 4.0.0)
xlsx * 0.6.3 2020-02-28 [1] CRAN (R 4.0.0)
xlsxjars * 0.6.1 2014-08-22 [1] CRAN (R 4.0.0)
XML * 3.99-0.3 2020-01-20 [1] CRAN (R 4.0.0)
xml2 * 1.3.0 2020-04-01 [1] CRAN (R 4.0.0)
xmlparsedata * 1.0.3 2019-09-27 [1] CRAN (R 4.0.0)
xopen * 1.0.0 2018-09-17 [1] CRAN (R 4.0.0)
xptr * 1.1.3 2020-04-03 [1] CRAN (R 4.0.0)
xtable * 1.8-4 2019-04-21 [1] CRAN (R 4.0.0)
xts * 0.12-0 2020-01-19 [1] CRAN (R 4.0.0)
XVector * 0.27.2 2020-04-07 [1] Bioconductor
yaml * 2.2.1 2020-02-01 [1] CRAN (R 4.0.0)
yesno * 0.1.1 2020-03-04 [1] CRAN (R 4.0.0)
zeallot * 0.1.0 2018-01-28 [1] CRAN (R 4.0.0)
zebrafishRNASeq * 1.7.0 2019-10-31 [1] Bioconductor
zinbwave * 1.9.2 2020-04-07 [1] Bioconductor
zip * 2.0.4 2019-09-01 [1] CRAN (R 4.0.0)
zipcode * 1.0 2012-03-12 [1] CRAN (R 4.0.0)
zlibbioc * 1.33.1 2020-04-07 [1] Bioconductor
zoo * 1.8-7 2020-01-10 [1] CRAN (R 4.0.0)
[1] /Library/Frameworks/R.framework/Versions/4.0/Resources/library
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