lcolladotor · November 4, 2020 01:45
diff --git a/current_and_former_r_packages.R b/current_and_former_r_packages.R
 > current
  [1] "annotate"
  [2] "AnnotationDbi"
  [3] "AnnotationFilter"
  [4] "AnnotationForge"
  [5] "AnnotationHub"
  [6] "AnnotationHubData"
  [7] "ari"
  [8] "AsioHeaders"
  [9] "askpass"
 [10] "assertthat"
 [11] "attempt"
 [12] "aws.signature"
 [13] "backports"
 [14] "base"
 [15] "base64enc"
 [16] "beachmat"
 [17] "beeswarm"
 [18] "benchmarkme"
 [19] "benchmarkmeData"
 [20] "BH"
 [21] "bibtex"
 [22] "Biobase"
 [23] "BiocCheck"
 [24] "BiocFileCache"
 [25] "BiocGenerics"
 [26] "BiocManager"
 [27] "BiocNeighbors"
 [28] "BiocParallel"
 [29] "BiocSingular"
 [30] "BiocStyle"
 [31] "biocthis"
 [32] "BiocVersion"
 [33] "biocViews"
 [34] "BiocWorkflowTools"
 [35] "biomaRt"
 [36] "Biostrings"
 [37] "biovizBase"
 [38] "bit"
 [39] "bit64"
 [40] "bitops"
 [41] "blob"
 [42] "bluster"
 [43] "bmp"
 [44] "bookdown"
 [45] "boot"
 [46] "brainflowprobes"
 [47] "brew"
 [48] "brio"
 [49] "broom"
 [50] "BSgenome"
 [51] "BSgenome.Hsapiens.UCSC.hg19"
 [52] "bumphunter"
 [53] "Cairo"
 [54] "callr"
 [55] "caTools"
 [56] "cellranger"
 [57] "checkmate"
 [58] "circlize"
 [59] "class"
 [60] "cli"
 [61] "clipr"
 [62] "clue"
 [63] "cluster"
 [64] "clusterProfiler"
 [65] "cmdfun"
 [66] "codetools"
 [67] "colorout"
 [68] "colorRamps"
 [69] "colorspace"
 [70] "colourpicker"
 [71] "commonmark"
 [72] "compiler"
 [73] "ComplexHeatmap"
 [74] "config"
 [75] "corrplot"
 [76] "covr"
 [77] "cowplot"
 [78] "cpp11"
 [79] "crayon"
 [80] "crosstalk"
 [81] "curl"
 [82] "data.table"
 [83] "datasets"
 [84] "DBI"
 [85] "dbplyr"
 [86] "DEFormats"
 [87] "DelayedArray"
 [88] "DelayedMatrixStats"
 [89] "derfinder"
 [90] "derfinderData"
 [91] "derfinderHelper"
 [92] "derfinderPlot"
 [93] "desc"
 [94] "DESeq2"
 [95] "devtools"
 [96] "dichromat"
 [97] "diffobj"
 [98] "digest"
 [99] "DO.db"
 [100] "dockerfiler"
 [101] "doParallel"
 [102] "doRNG"
 [103] "DOSE"
 [104] "dotCall64"
 [105] "downlit"
 [106] "downloader"
 [107] "dplyr"
 [108] "dqrng"
 [109] "DT"
 [110] "edgeR"
 [111] "ellipsis"
 [112] "enrichplot"
 [113] "EnsDb.Hsapiens.v79"
 [114] "ensembldb"
 [115] "evaluate"
 [116] "ExperimentHub"
 [117] "ExploreModelMatrix"
 [118] "fansi"
 [119] "farver"
 [120] "fastmap"
 [121] "fastmatch"
 [122] "fgsea"
 [123] "fields"
 [124] "forcats"
 [125] "foreach"
 [126] "foreign"
 [127] "formatR"
 [128] "Formula"
 [129] "fs"
 [130] "futile.logger"
 [131] "futile.options"
 [132] "gargle"
 [133] "genefilter"
 [134] "geneplotter"
 [135] "generics"
 [136] "GenomeInfoDb"
 [137] "GenomeInfoDbData"
 [138] "GenomicAlignments"
 [139] "GenomicFeatures"
 [140] "GenomicFiles"
 [141] "GenomicRanges"
 [142] "GenomicState"
 [143] "GEOquery"
 [144] "getopt"
 [145] "GetoptLong"
 [146] "GGally"
 [147] "ggbeeswarm"
 [148] "ggbio"
 [149] "ggforce"
 [150] "ggplot2"
 [151] "ggraph"
 [152] "ggrepel"
 [153] "ggthemes"
 [154] "gh"
 [155] "git2r"
 [156] "GlobalOptions"
 [157] "glue"
 [158] "GO.db"
 [159] "golem"
 [160] "googleAuthR"
 [161] "googledrive"
 [162] "googleLanguageR"
 [163] "googlesheets4"
 [164] "GOSemSim"
 [165] "gplots"
 [166] "graph"
 [167] "graphics"
 [168] "graphlayouts"
 [169] "grDevices"
 [170] "grid"
 [171] "gridExtra"
 [172] "gtable"
 [173] "gtools"
 [174] "Gviz"
 [175] "haven"
 [176] "HDF5Array"
 [177] "here"
 [178] "hexbin"
 [179] "highr"
 [180] "Hmisc"
 [181] "hms"
 [182] "htmlTable"
 [183] "htmltools"
 [184] "htmlwidgets"
 [185] "httpuv"
 [186] "httr"
 [187] "ids"
 [188] "igraph"
 [189] "ini"
 [190] "interactiveDisplayBase"
 [191] "IRanges"
 [192] "irlba"
 [193] "iSEE"
 [194] "isoband"
 [195] "iterators"
 [196] "jaffelab"
 [197] "jpeg"
 [198] "jsonlite"
 [199] "KernSmooth"
 [200] "knitcitations"
 [201] "knitr"
 [202] "knitrBootstrap"
 [203] "labeling"
 [204] "lambda.r"
 [205] "later"
 [206] "lattice"
 [207] "latticeExtra"
 [208] "lazyeval"
 [209] "LIBDpheno"
 [210] "libdRSE"
 [211] "lifecycle"
 [212] "limma"
 [213] "lme4"
 [214] "lmerTest"
 [215] "lmtest"
 [216] "locfit"
 [217] "lubridate"
 [218] "magrittr"
 [219] "maps"
 [220] "markdown"
 [221] "MASS"
 [222] "Matrix"
 [223] "MatrixEQTL"
 [224] "MatrixGenerics"
 [225] "matrixStats"
 [226] "megadepth"
 [227] "memoise"
 [228] "methods"
 [229] "mgcv"
 [230] "mime"
 [231] "miniUI"
 [232] "minqa"
 [233] "modelr"
 [234] "mscstts"
 [235] "munsell"
 [236] "nlme"
 [237] "nloptr"
 [238] "nnet"
 [239] "numDeriv"
 [240] "openssl"
 [241] "openxlsx"
 [242] "optparse"
 [243] "org.Hs.eg.db"
 [244] "OrganismDbi"
 [245] "pagedown"
 [246] "parallel"
 [247] "pasilla"
 [248] "patchwork"
 [249] "pbkrtest"
 [250] "pheatmap"
 [251] "pillar"
 [252] "pkgbuild"
 [253] "pkgconfig"
 [254] "pkgdown"
 [255] "pkgload"
 [256] "plogr"
 [257] "plotly"
 [258] "plyr"
 [259] "png"
 [260] "Polychrome"
 [261] "polyclip"
 [262] "praise"
 [263] "prettyunits"
 [264] "processx"
 [265] "progress"
 [266] "promises"
 [267] "ProtGenerics"
 [268] "pryr"
 [269] "ps"
 [270] "purrr"
 [271] "qvalue"
 [272] "R.cache"
 [273] "R.methodsS3"
 [274] "R.oo"
 [275] "R.utils"
 [276] "R6"
 [277] "rafalib"
 [278] "ragg"
 [279] "rappdirs"
 [280] "RBGL"
 [281] "rBiopaxParser"
 [282] "rcmdcheck"
 [283] "RColorBrewer"
 [284] "Rcpp"
 [285] "RcppAnnoy"
 [286] "RcppArmadillo"
 [287] "RcppEigen"
 [288] "RcppHNSW"
 [289] "RCurl"
 [290] "RCy3"
 [291] "readbitmap"
 [292] "readr"
 [293] "readxl"
 [294] "recount"
 [295] "recount.bwtool"
 [296] "recount3"
 [297] "recountWorkflow"
 [298] "RefManageR"
 [299] "regionReport"
 [300] "regutools"
 [301] "rematch"
 [302] "rematch2"
 [303] "remotes"
 [304] "rentrez"
 [305] "reprex"
 [306] "reshape"
 [307] "reshape2"
 [308] "rex"
 [309] "rhdf5"
 [310] "rhdf5filters"
 [311] "Rhdf5lib"
 [312] "Rhtslib"
 [313] "rintrojs"
 [314] "rio"
 [315] "rjson"
 [316] "RJSONIO"
 [317] "rlang"
 [318] "rmarkdown"
 [319] "rmote"
 [320] "rngtools"
 [321] "roxygen2"
 [322] "rpart"
 [323] "rprojroot"
 [324] "Rsamtools"
 [325] "RSQLite"
 [326] "rsthemes"
 [327] "rstudioapi"
 [328] "rsvd"
 [329] "rtracklayer"
 [330] "rtweet"
 [331] "RUnit"
 [332] "rvcheck"
 [333] "rversions"
 [334] "rvest"
 [335] "S4Vectors"
 [336] "scales"
 [337] "scater"
 [338] "scatterpie"
 [339] "scatterplot3d"
 [340] "scran"
 [341] "scuttle"
 [342] "segmented"
 [343] "selectr"
 [344] "servr"
 [345] "sessioninfo"
 [346] "sgejobs"
 [347] "shadowtext"
 [348] "shape"
 [349] "shiny"
 [350] "shinyAce"
 [351] "shinycsv"
 [352] "shinydashboard"
 [353] "shinyjs"
 [354] "shinyWidgets"
 [355] "signal"
 [356] "SingleCellExperiment"
 [357] "sitmo"
 [358] "snow"
 [359] "sourcetools"
 [360] "spam"
 [361] "sparseMatrixStats"
 [362] "spatial"
 [363] "SpatialExperiment"
 [364] "spatialLIBD"
 [365] "splines"
 [366] "statmod"
 [367] "stats"
 [368] "stats4"
 [369] "stringdist"
 [370] "stringi"
 [371] "stringr"
 [372] "styler"
 [373] "SummarizedExperiment"
 [374] "survival"
 [375] "sva"
 [376] "sys"
 [377] "systemfonts"
 [378] "tcltk"
 [379] "testthat"
 [380] "text2speech"
 [381] "textshaping"
 [382] "tibble"
 [383] "tidygraph"
 [384] "tidyr"
 [385] "tidyselect"
 [386] "tidyverse"
 [387] "tiff"
 [388] "tinytex"
 [389] "tools"
 [390] "translations"
 [391] "tuneR"
 [392] "tweenr"
 [393] "TxDb.Hsapiens.UCSC.hg19.knownGene"
 [394] "usethis"
 [395] "utf8"
 [396] "utils"
 [397] "uuid"
 [398] "variancePartition"
 [399] "VariantAnnotation"
 [400] "vcd"
 [401] "vctrs"
 [402] "VennDiagram"
 [403] "vipor"
 [404] "viridis"
 [405] "viridisLite"
 [406] "waldo"
 [407] "webshot"
 [408] "websocket"
 [409] "whisker"
 [410] "withr"
 [411] "xaringan"
 [412] "xaringanExtra"
 [413] "xaringanthemer"
 [414] "xfun"
 [415] "XML"
 [416] "xml2"
 [417] "xopen"
 [418] "xtable"
 [419] "XVector"
 [420] "yaml"
 [421] "zip"
 [422] "zlibbioc"
 [423] "zoo"
 > ## Missing
 > installed[!installed %in% current]
  [1] "abind"
  [2] "acepack"
  [3] "ada"
  [4] "additivityTests"
  [5] "ade4"
  [6] "admisc"
  [7] "AER"
  [8] "affy"
  [9] "affyio"
 [10] "AGD"
 [11] "airway"
 [12] "akima"
 [13] "ALL"
 [14] "alpineData"
 [15] "amap"
 [16] "AnalyzeFMRI"
 [17] "animation"
 [18] "ape"
 [19] "arm"
 [20] "aroma.light"
 [21] "arules"
 [22] "assertive"
 [23] "assertive.base"
 [24] "assertive.code"
 [25] "assertive.data"
 [26] "assertive.data.uk"
 [27] "assertive.data.us"
 [28] "assertive.datetimes"
 [29] "assertive.files"
 [30] "assertive.matrices"
 [31] "assertive.models"
 [32] "assertive.numbers"
 [33] "assertive.properties"
 [34] "assertive.reflection"
 [35] "assertive.sets"
 [36] "assertive.strings"
 [37] "assertive.types"
 [38] "available"
 [39] "aws.polly"
 [40] "aws.s3"
 [41] "ballgown"
 [42] "base64"
 [43] "base64url"
 [44] "BatchJobs"
 [45] "batchtools"
 [46] "BayesX"
 [47] "baySeq"
 [48] "BBmisc"
 [49] "bbmle"
 [50] "bdsmatrix"
 [51] "beanplot"
 [52] "BEDMatrix"
 [53] "betareg"
 [54] "BgeeDB"
 [55] "BiasedUrn"
 [56] "biclust"
 [57] "biglm"
 [58] "bindr"
 [59] "bindrcpp"
 [60] "BiocPkgTools"
 [61] "biocthisexample"
 [62] "bladderbatch"
 [63] "blockmodeling"
 [64] "blogdown"
 [65] "BoolNet"
 [66] "brglm"
 [67] "BrowserViz"
 [68] "BSgenome.Hsapiens.UCSC.hg38"
 [69] "bsseq"
 [70] "bsseqData"
 [71] "c3net"
 [72] "ca"
 [73] "candisc"
 [74] "car"
 [75] "carData"
 [76] "catdata"
 [77] "Category"
 [78] "cba"
 [79] "cem"
 [80] "chron"
 [81] "CircStats"
 [82] "classInt"
 [83] "clisymbols"
 [84] "clusterExperiment"
 [85] "ClusterR"
 [86] "clv"
 [87] "cmprsk"
 [88] "CNEr"
 [89] "coda"
 [90] "coin"
 [91] "collections"
 [92] "combinat"
 [93] "CompQuadForm"
 [94] "ConsensusClusterPlus"
 [95] "coop"
 [96] "corpcor"
 [97] "coxme"
 [98] "crochet"
 [99] "csaw"
 [100] "csvy"
 [101] "cyclocomp"
 [102] "d3heatmap"
 [103] "DAAG"
 [104] "DataCombine"
 [105] "date"
 [106] "dbscan"
 [107] "debrowser"
 [108] "debugme"
 [109] "deldir"
 [110] "dendextend"
 [111] "denstrip"
 [112] "DEoptimR"
 [113] "Deriv"
 [114] "descr"
 [115] "DescTools"
 [116] "DESeq"
 [117] "details"
 [118] "DiagrammeR"
 [119] "DiffBind"
 [120] "diptest"
 [121] "DirichletMultinomial"
 [122] "DMRScan"
 [123] "dnet"
 [124] "doBy"
 [125] "doMC"
 [126] "DOT"
 [127] "dtw"
 [128] "dynamicTreeCut"
 [129] "DynDoc"
 [130] "dynlm"
 [131] "e1071"
 [132] "easyweb"
 [133] "EBSeq"
 [134] "EDASeq"
 [135] "edge"
 [136] "egg"
 [137] "ellipse"
 [138] "emdbook"
 [139] "emojifont"
 [140] "enc"
 [141] "energy"
 [142] "EnsDb.Hsapiens.v75"
 [143] "EnvStats"
 [144] "epivizr"
 [145] "epivizrData"
 [146] "epivizrServer"
 [147] "europepmc"
 [148] "evd"
 [149] "exactRankTests"
 [150] "ExperimentHubData"
 [151] "expm"
 [152] "Fahrmeir"
 [153] "fail"
 [154] "fastcluster"
 [155] "fastICA"
 [156] "fcuk"
 [157] "FD"
 [158] "FDb.InfiniumMethylation.hg19"
 [159] "fdrtool"
 [160] "feather"
 [161] "ff"
 [162] "ffpe"
 [163] "filehash"
 [164] "fit.models"
 [165] "fitdistrplus"
 [166] "flexclust"
 [167] "flexmix"
 [168] "FNN"
 [169] "formattable"
 [170] "forward"
 [171] "fpc"
 [172] "fracdiff"
 [173] "future"
 [174] "future.apply"
 [175] "gam"
 [176] "GAMBoost"
 [177] "gameofthrones"
 [178] "gamlss"
 [179] "gamlss.data"
 [180] "gamlss.dist"
 [181] "gbm"
 [182] "gbRd"
 [183] "gcite"
 [184] "gclus"
 [185] "gdata"
 [186] "gee"
 [187] "geepack"
 [188] "geneLenDataBase"
 [189] "geometry"
 [190] "ggdendro"
 [191] "ggplotify"
 [192] "ggpubr"
 [193] "ggridges"
 [194] "ggsci"
 [195] "ggsignif"
 [196] "ggvis"
 [197] "glmmML"
 [198] "glmnet"
 [199] "globals"
 [200] "gmodels"
 [201] "gmp"
 [202] "gnm"
 [203] "goodpractice"
 [204] "googlesheets"
 [205] "googleVis"
 [206] "goseq"
 [207] "GOstats"
 [208] "GPArotation"
 [209] "gpclib"
 [210] "graphite"
 [211] "gridBase"
 [212] "gridGraphics"
 [213] "GSE62944"
 [214] "GSEABase"
 [215] "gsl"
 [216] "gWidgets"
 [217] "gWidgetstcltk"
 [218] "Harman"
 [219] "harrypotter"
 [220] "heatmaply"
 [221] "heplots"
 [222] "HiddenMarkov"
 [223] "highlight"
 [224] "hmeasure"
 [225] "howmany"
 [226] "HSAUR"
 [227] "hunspell"
 [228] "hwriter"
 [229] "ica"
 [230] "ideal"
 [231] "igraphdata"
 [232] "IHW"
 [233] "IlluminaHumanMethylation450kanno.ilmn12.hg19"
 [234] "illuminaio"
 [235] "impute"
 [236] "ineq"
 [237] "influenceR"
 [238] "infotheo"
 [239] "inline"
 [240] "irr"
 [241] "isa2"
 [242] "ISOcodes"
 [243] "ISwR"
 [244] "jackstraw"
 [245] "janeaustenr"
 [246] "janitor"
 [247] "jcolors"
 [248] "jomo"
 [249] "js4shiny"
 [250] "KEGGgraph"
 [251] "KEGGREST"
 [252] "kernlab"
 [253] "kinship2"
 [254] "km.ci"
 [255] "KMsurv"
 [256] "laeken"
 [257] "Lahman"
 [258] "languageserver"
 [259] "lars"
 [260] "lavaan"
 [261] "leaps"
 [262] "leiden"
 [263] "lfa"
 [264] "libcoin"
 [265] "limSolve"
 [266] "linprog"
 [267] "lintr"
 [268] "listenv"
 [269] "listviewer"
 [270] "lobstr"
 [271] "locfdr"
 [272] "logspline"
 [273] "lokern"
 [274] "lpSolve"
 [275] "lpsymphony"
 [276] "lsei"
 [277] "lumi"
 [278] "magic"
 [279] "magick"
 [280] "mail"
 [281] "mailR"
 [282] "manipulate"
 [283] "manipulateWidget"
 [284] "mapdata"
 [285] "mapproj"
 [286] "maptools"
 [287] "maSigPro"
 [288] "Matching"
 [289] "MatchIt"
 [290] "matlab"
 [291] "matrixcalc"
 [292] "MatrixModels"
 [293] "maxLik"
 [294] "maxlike"
 [295] "maxstat"
 [296] "mbkmeans"
 [297] "mclust"
 [298] "mcmc"
 [299] "MCMCpack"
 [300] "mem"
 [301] "metap"
 [302] "methylumi"
 [303] "Mfuzz"
 [304] "mi"
 [305] "mice"
 [306] "microbenchmark"
 [307] "minet"
 [308] "minfi"
 [309] "misc3d"
 [310] "miscTools"
 [311] "mitml"
 [312] "mitools"
 [313] "mix"
 [314] "mixtools"
 [315] "mlbench"
 [316] "mnormt"
 [317] "mockery"
 [318] "modeltools"
 [319] "mondate"
 [320] "MPV"
 [321] "multcomp"
 [322] "multtest"
 [323] "MuMIn"
 [324] "mutoss"
 [325] "mvnormtest"
 [326] "mvtnorm"
 [327] "nleqslv"
 [328] "NLP"
 [329] "NMF"
 [330] "nomnoml"
 [331] "nor1mix"
 [332] "nortest"
 [333] "npsurv"
 [334] "nws"
 [335] "nycflights13"
 [336] "officer"
 [337] "oompaBase"
 [338] "OpenImageR"
 [339] "optmatch"
 [340] "ordinal"
 [341] "org.Cf.eg.db"
 [342] "org.Mm.eg.db"
 [343] "Organism.dplyr"
 [344] "oz"
 [345] "packrat"
 [346] "paletteer"
 [347] "palr"
 [348] "pals"
 [349] "pamr"
 [350] "pan"
 [351] "parmigene"
 [352] "parsedate"
 [353] "parsetools"
 [354] "partitions"
 [355] "party"
 [356] "pathview"
 [357] "pbapply"
 [358] "pbivnorm"
 [359] "pbmcapply"
 [360] "pcaExplorer"
 [361] "pcaPP"
 [362] "perm"
 [363] "permute"
 [364] "phylobase"
 [365] "pixmap"
 [366] "pkgcond"
 [367] "pkgmaker"
 [368] "PKI"
 [369] "PKPDmodels"
 [370] "plm"
 [371] "plotrix"
 [372] "pmml"
 [373] "pmmlTransformations"
 [374] "poLCA"
 [375] "polycor"
 [376] "polyester"
 [377] "polynom"
 [378] "postlogic"
 [379] "poweRlaw"
 [380] "prabclus"
 [381] "pracma"
 [382] "preprocessCore"
 [383] "prettycode"
 [384] "prismatic"
 [385] "profileModel"
 [386] "profvis"
 [387] "proto"
 [388] "proxy"
 [389] "pscl"
 [390] "psych"
 [391] "psygenet2r"
 [392] "purrrogress"
 [393] "PWMEnrich"
 [394] "qap"
 [395] "quadprog"
 [396] "qualV"
 [397] "quantmod"
 [398] "quantreg"
 [399] "qvcalc"
 [400] "R.matlab"
 [401] "r2d3"
 [402] "R2OpenBUGS"
 [403] "R2WinBUGS"
 [404] "randomForest"
 [405] "randomForestSRC"
 [406] "ranger"
 [407] "RANN"
 [408] "raster"
 [409] "rasterVis"
 [410] "rbounds"
 [411] "RcppParallel"
 [412] "RcppProgress"
 [413] "RcppRoll"
 [414] "Rcsdp"
 [415] "Rdpack"
 [416] "rdrop2"
 [417] "reactome.db"
 [418] "ReactomePA"
 [419] "readODS"
 [420] "redoc"
 [421] "registry"
 [422] "relimp"
 [423] "repr"
 [424] "reticulate"
 [425] "rfigshare"
 [426] "rgenoud"
 [427] "rgexf"
 [428] "rgl"
 [429] "Rgraphviz"
 [430] "rhub"
 [431] "RItools"
 [432] "rJava"
 [433] "rlecuyer"
 [434] "RMariaDB"
 [435] "rmatio"
 [436] "rmeta"
 [437] "Rmpfr"
 [438] "RMySQL"
 [439] "RnBeads"
 [440] "rncl"
 [441] "RNeXML"
 [442] "robust"
 [443] "robustbase"
 [444] "ROC"
 [445] "ROCR"
 [446] "Rook"
 [447] "roxygen2md"
 [448] "rpart.plot"
 [449] "rpf"
 [450] "rrcov"
 [451] "rsconnect"
 [452] "RSpectra"
 [453] "rstatix"
 [454] "Rsubread"
 [455] "rsvg"
 [456] "RSVGTipsDevice"
 [457] "Rtsne"
 [458] "rworldmap"
 [459] "rworldxtra"
 [460] "RXKCD"
 [461] "sampleSelection"
 [462] "sandwich"
 [463] "sankey"
 [464] "scalreg"
 [465] "scholar"
 [466] "scico"
 [467] "scrime"
 [468] "scRNAseq"
 [469] "sctransform"
 [470] "SDMTools"
 [471] "sem"
 [472] "semTools"
 [473] "sendmailR"
 [474] "seqLogo"
 [475] "seriation"
 [476] "sets"
 [477] "Seurat"
 [478] "sfsmisc"
 [479] "SGSeq"
 [480] "shapefiles"
 [481] "shinyBS"
 [482] "shinythemes"
 [483] "ShortRead"
 [484] "showtext"
 [485] "showtextdb"
 [486] "siggenes"
 [487] "simplegraph"
 [488] "slackr"
 [489] "slam"
 [490] "Sleuth2"
 [491] "sm"
 [492] "sn"
 [493] "snakecase"
 [494] "snm"
 [495] "SnowballC"
 [496] "snowfall"
 [497] "softImpute"
 [498] "sp"
 [499] "SparseM"
 [500] "spData"
 [501] "spelling"
 [502] "SRAdb"
 [503] "stabs"
 [504] "StanHeaders"
 [505] "stopwords"
 [506] "strucchange"
 [507] "SuppDists"
 [508] "supraHex"
 [509] "survey"
 [510] "survminer"
 [511] "survMisc"
 [512] "Sushi"
 [513] "svd"
 [514] "svgPanZoom"
 [515] "sysfonts"
 [516] "sysreqs"
 [517] "systemfit"
 [518] "systemPipeR"
 [519] "TCGAbiolinks"
 [520] "tensorA"
 [521] "testextra"
 [522] "testit"
 [523] "texPreview"
 [524] "TFBSTools"
 [525] "TFisher"
 [526] "TFMPvalue"
 [527] "TH.data"
 [528] "threejs"
 [529] "tidytext"
 [530] "timeDate"
 [531] "timeSeries"
 [532] "tis"
 [533] "tkrplot"
 [534] "tkWidgets"
 [535] "tm"
 [536] "tokenizers"
 [537] "topGO"
 [538] "travis"
 [539] "tree"
 [540] "triebeard"
 [541] "trimcluster"
 [542] "tripack"
 [543] "truncreg"
 [544] "TSA"
 [545] "tseries"
 [546] "tsne"
 [547] "TSP"
 [548] "TTR"
 [549] "tuber"
 [550] "tufte"
 [551] "TxDb.Hsapiens.UCSC.hg38.knownGene"
 [552] "TxDb.Mmusculus.UCSC.mm10.ensGene"
 [553] "TxDb.Mmusculus.UCSC.mm10.knownGene"
 [554] "tximport"
 [555] "ucminf"
 [556] "udapi"
 [557] "udunits2"
 [558] "units"
 [559] "UpSetR"
 [560] "urca"
 [561] "urltools"
 [562] "uroot"
 [563] "uwot"
 [564] "V8"
 [565] "vcdExtra"
 [566] "vegan"
 [567] "venn"
 [568] "verification"
 [569] "VGAM"
 [570] "VGAMdata"
 [571] "VIM"
 [572] "visNetwork"
 [573] "vsn"
 [574] "wateRmelon"
 [575] "WGCNA"
 [576] "whoami"
 [577] "widgetTools"
 [578] "wiggleplotr"
 [579] "wordcloud"
 [580] "xlsx"
 [581] "xlsxjars"
 [582] "xmlparsedata"
 [583] "xptr"
 [584] "xts"
 [585] "yesno"
 [586] "zeallot"
 [587] "zebrafishRNASeq"
 [588] "zinbwave"
 [589] "zipcode"
	> current
	[1] "annotate"
	[2] "AnnotationDbi"
	[3] "AnnotationFilter"
	[4] "AnnotationForge"
	[5] "AnnotationHub"
	[6] "AnnotationHubData"
	[7] "ari"
	[8] "AsioHeaders"
	[9] "askpass"
	[10] "assertthat"
	[11] "attempt"
	[12] "aws.signature"
	[13] "backports"
	[14] "base"
	[15] "base64enc"
	[16] "beachmat"
	[17] "beeswarm"
	[18] "benchmarkme"
	[19] "benchmarkmeData"
	[20] "BH"
	[21] "bibtex"
	[22] "Biobase"
	[23] "BiocCheck"
	[24] "BiocFileCache"
	[25] "BiocGenerics"
	[26] "BiocManager"
	[27] "BiocNeighbors"
	[28] "BiocParallel"
	[29] "BiocSingular"
	[30] "BiocStyle"
	[31] "biocthis"
	[32] "BiocVersion"
	[33] "biocViews"
	[34] "BiocWorkflowTools"
	[35] "biomaRt"
	[36] "Biostrings"
	[37] "biovizBase"
	[38] "bit"
	[39] "bit64"
	[40] "bitops"
	[41] "blob"
	[42] "bluster"
	[43] "bmp"
	[44] "bookdown"
	[45] "boot"
	[46] "brainflowprobes"
	[47] "brew"
	[48] "brio"
	[49] "broom"
	[50] "BSgenome"
	[51] "BSgenome.Hsapiens.UCSC.hg19"
	[52] "bumphunter"
	[53] "Cairo"
	[54] "callr"
	[55] "caTools"
	[56] "cellranger"
	[57] "checkmate"
	[58] "circlize"
	[59] "class"
	[60] "cli"
	[61] "clipr"
	[62] "clue"
	[63] "cluster"
	[64] "clusterProfiler"
	[65] "cmdfun"
	[66] "codetools"
	[67] "colorout"
	[68] "colorRamps"
	[69] "colorspace"
	[70] "colourpicker"
	[71] "commonmark"
	[72] "compiler"
	[73] "ComplexHeatmap"
	[74] "config"
	[75] "corrplot"
	[76] "covr"
	[77] "cowplot"
	[78] "cpp11"
	[79] "crayon"
	[80] "crosstalk"
	[81] "curl"
	[82] "data.table"
	[83] "datasets"
	[84] "DBI"
	[85] "dbplyr"
	[86] "DEFormats"
	[87] "DelayedArray"
	[88] "DelayedMatrixStats"
	[89] "derfinder"
	[90] "derfinderData"
	[91] "derfinderHelper"
	[92] "derfinderPlot"
	[93] "desc"
	[94] "DESeq2"
	[95] "devtools"
	[96] "dichromat"
	[97] "diffobj"
	[98] "digest"
	[99] "DO.db"
	[100] "dockerfiler"
	[101] "doParallel"
	[102] "doRNG"
	[103] "DOSE"
	[104] "dotCall64"
	[105] "downlit"
	[106] "downloader"
	[107] "dplyr"
	[108] "dqrng"
	[109] "DT"
	[110] "edgeR"
	[111] "ellipsis"
	[112] "enrichplot"
	[113] "EnsDb.Hsapiens.v79"
	[114] "ensembldb"
	[115] "evaluate"
	[116] "ExperimentHub"
	[117] "ExploreModelMatrix"
	[118] "fansi"
	[119] "farver"
	[120] "fastmap"
	[121] "fastmatch"
	[122] "fgsea"
	[123] "fields"
	[124] "forcats"
	[125] "foreach"
	[126] "foreign"
	[127] "formatR"
	[128] "Formula"
	[129] "fs"
	[130] "futile.logger"
	[131] "futile.options"
	[132] "gargle"
	[133] "genefilter"
	[134] "geneplotter"
	[135] "generics"
	[136] "GenomeInfoDb"
	[137] "GenomeInfoDbData"
	[138] "GenomicAlignments"
	[139] "GenomicFeatures"
	[140] "GenomicFiles"
	[141] "GenomicRanges"
	[142] "GenomicState"
	[143] "GEOquery"
	[144] "getopt"
	[145] "GetoptLong"
	[146] "GGally"
	[147] "ggbeeswarm"
	[148] "ggbio"
	[149] "ggforce"
	[150] "ggplot2"
	[151] "ggraph"
	[152] "ggrepel"
	[153] "ggthemes"
	[154] "gh"
	[155] "git2r"
	[156] "GlobalOptions"
	[157] "glue"
	[158] "GO.db"
	[159] "golem"
	[160] "googleAuthR"
	[161] "googledrive"
	[162] "googleLanguageR"
	[163] "googlesheets4"
	[164] "GOSemSim"
	[165] "gplots"
	[166] "graph"
	[167] "graphics"
	[168] "graphlayouts"
	[169] "grDevices"
	[170] "grid"
	[171] "gridExtra"
	[172] "gtable"
	[173] "gtools"
	[174] "Gviz"
	[175] "haven"
	[176] "HDF5Array"
	[177] "here"
	[178] "hexbin"
	[179] "highr"
	[180] "Hmisc"
	[181] "hms"
	[182] "htmlTable"
	[183] "htmltools"
	[184] "htmlwidgets"
	[185] "httpuv"
	[186] "httr"
	[187] "ids"
	[188] "igraph"
	[189] "ini"
	[190] "interactiveDisplayBase"
	[191] "IRanges"
	[192] "irlba"
	[193] "iSEE"
	[194] "isoband"
	[195] "iterators"
	[196] "jaffelab"
	[197] "jpeg"
	[198] "jsonlite"
	[199] "KernSmooth"
	[200] "knitcitations"
	[201] "knitr"
	[202] "knitrBootstrap"
	[203] "labeling"
	[204] "lambda.r"
	[205] "later"
	[206] "lattice"
	[207] "latticeExtra"
	[208] "lazyeval"
	[209] "LIBDpheno"
	[210] "libdRSE"
	[211] "lifecycle"
	[212] "limma"
	[213] "lme4"
	[214] "lmerTest"
	[215] "lmtest"
	[216] "locfit"
	[217] "lubridate"
	[218] "magrittr"
	[219] "maps"
	[220] "markdown"
	[221] "MASS"
	[222] "Matrix"
	[223] "MatrixEQTL"
	[224] "MatrixGenerics"
	[225] "matrixStats"
	[226] "megadepth"
	[227] "memoise"
	[228] "methods"
	[229] "mgcv"
	[230] "mime"
	[231] "miniUI"
	[232] "minqa"
	[233] "modelr"
	[234] "mscstts"
	[235] "munsell"
	[236] "nlme"
	[237] "nloptr"
	[238] "nnet"
	[239] "numDeriv"
	[240] "openssl"
	[241] "openxlsx"
	[242] "optparse"
	[243] "org.Hs.eg.db"
	[244] "OrganismDbi"
	[245] "pagedown"
	[246] "parallel"
	[247] "pasilla"
	[248] "patchwork"
	[249] "pbkrtest"
	[250] "pheatmap"
	[251] "pillar"
	[252] "pkgbuild"
	[253] "pkgconfig"
	[254] "pkgdown"
	[255] "pkgload"
	[256] "plogr"
	[257] "plotly"
	[258] "plyr"
	[259] "png"
	[260] "Polychrome"
	[261] "polyclip"
	[262] "praise"
	[263] "prettyunits"
	[264] "processx"
	[265] "progress"
	[266] "promises"
	[267] "ProtGenerics"
	[268] "pryr"
	[269] "ps"
	[270] "purrr"
	[271] "qvalue"
	[272] "R.cache"
	[273] "R.methodsS3"
	[274] "R.oo"
	[275] "R.utils"
	[276] "R6"
	[277] "rafalib"
	[278] "ragg"
	[279] "rappdirs"
	[280] "RBGL"
	[281] "rBiopaxParser"
	[282] "rcmdcheck"
	[283] "RColorBrewer"
	[284] "Rcpp"
	[285] "RcppAnnoy"
	[286] "RcppArmadillo"
	[287] "RcppEigen"
	[288] "RcppHNSW"
	[289] "RCurl"
	[290] "RCy3"
	[291] "readbitmap"
	[292] "readr"
	[293] "readxl"
	[294] "recount"
	[295] "recount.bwtool"
	[296] "recount3"
	[297] "recountWorkflow"
	[298] "RefManageR"
	[299] "regionReport"
	[300] "regutools"
	[301] "rematch"
	[302] "rematch2"
	[303] "remotes"
	[304] "rentrez"
	[305] "reprex"
	[306] "reshape"
	[307] "reshape2"
	[308] "rex"
	[309] "rhdf5"
	[310] "rhdf5filters"
	[311] "Rhdf5lib"
	[312] "Rhtslib"
	[313] "rintrojs"
	[314] "rio"
	[315] "rjson"
	[316] "RJSONIO"
	[317] "rlang"
	[318] "rmarkdown"
	[319] "rmote"
	[320] "rngtools"
	[321] "roxygen2"
	[322] "rpart"
	[323] "rprojroot"
	[324] "Rsamtools"
	[325] "RSQLite"
	[326] "rsthemes"
	[327] "rstudioapi"
	[328] "rsvd"
	[329] "rtracklayer"
	[330] "rtweet"
	[331] "RUnit"
	[332] "rvcheck"
	[333] "rversions"
	[334] "rvest"
	[335] "S4Vectors"
	[336] "scales"
	[337] "scater"
	[338] "scatterpie"
	[339] "scatterplot3d"
	[340] "scran"
	[341] "scuttle"
	[342] "segmented"
	[343] "selectr"
	[344] "servr"
	[345] "sessioninfo"
	[346] "sgejobs"
	[347] "shadowtext"
	[348] "shape"
	[349] "shiny"
	[350] "shinyAce"
	[351] "shinycsv"
	[352] "shinydashboard"
	[353] "shinyjs"
	[354] "shinyWidgets"
	[355] "signal"
	[356] "SingleCellExperiment"
	[357] "sitmo"
	[358] "snow"
	[359] "sourcetools"
	[360] "spam"
	[361] "sparseMatrixStats"
	[362] "spatial"
	[363] "SpatialExperiment"
	[364] "spatialLIBD"
	[365] "splines"
	[366] "statmod"
	[367] "stats"
	[368] "stats4"
	[369] "stringdist"
	[370] "stringi"
	[371] "stringr"
	[372] "styler"
	[373] "SummarizedExperiment"
	[374] "survival"
	[375] "sva"
	[376] "sys"
	[377] "systemfonts"
	[378] "tcltk"
	[379] "testthat"
	[380] "text2speech"
	[381] "textshaping"
	[382] "tibble"
	[383] "tidygraph"
	[384] "tidyr"
	[385] "tidyselect"
	[386] "tidyverse"
	[387] "tiff"
	[388] "tinytex"
	[389] "tools"
	[390] "translations"
	[391] "tuneR"
	[392] "tweenr"
	[393] "TxDb.Hsapiens.UCSC.hg19.knownGene"
	[394] "usethis"
	[395] "utf8"
	[396] "utils"
	[397] "uuid"
	[398] "variancePartition"
	[399] "VariantAnnotation"
	[400] "vcd"
	[401] "vctrs"
	[402] "VennDiagram"
	[403] "vipor"
	[404] "viridis"
	[405] "viridisLite"
	[406] "waldo"
	[407] "webshot"
	[408] "websocket"
	[409] "whisker"
	[410] "withr"
	[411] "xaringan"
	[412] "xaringanExtra"
	[413] "xaringanthemer"
	[414] "xfun"
	[415] "XML"
	[416] "xml2"
	[417] "xopen"
	[418] "xtable"
	[419] "XVector"
	[420] "yaml"
	[421] "zip"
	[422] "zlibbioc"
	[423] "zoo"
	> ## Missing
	> installed[!installed %in% current]
	[1] "abind"
	[2] "acepack"
	[3] "ada"
	[4] "additivityTests"
	[5] "ade4"
	[6] "admisc"
	[7] "AER"
	[8] "affy"
	[9] "affyio"
	[10] "AGD"
	[11] "airway"
	[12] "akima"
	[13] "ALL"
	[14] "alpineData"
	[15] "amap"
	[16] "AnalyzeFMRI"
	[17] "animation"
	[18] "ape"
	[19] "arm"
	[20] "aroma.light"
	[21] "arules"
	[22] "assertive"
	[23] "assertive.base"
	[24] "assertive.code"
	[25] "assertive.data"
	[26] "assertive.data.uk"
	[27] "assertive.data.us"
	[28] "assertive.datetimes"
	[29] "assertive.files"
	[30] "assertive.matrices"
	[31] "assertive.models"
	[32] "assertive.numbers"
	[33] "assertive.properties"
	[34] "assertive.reflection"
	[35] "assertive.sets"
	[36] "assertive.strings"
	[37] "assertive.types"
	[38] "available"
	[39] "aws.polly"
	[40] "aws.s3"
	[41] "ballgown"
	[42] "base64"
	[43] "base64url"
	[44] "BatchJobs"
	[45] "batchtools"
	[46] "BayesX"
	[47] "baySeq"
	[48] "BBmisc"
	[49] "bbmle"
	[50] "bdsmatrix"
	[51] "beanplot"
	[52] "BEDMatrix"
	[53] "betareg"
	[54] "BgeeDB"
	[55] "BiasedUrn"
	[56] "biclust"
	[57] "biglm"
	[58] "bindr"
	[59] "bindrcpp"
	[60] "BiocPkgTools"
	[61] "biocthisexample"
	[62] "bladderbatch"
	[63] "blockmodeling"
	[64] "blogdown"
	[65] "BoolNet"
	[66] "brglm"
	[67] "BrowserViz"
	[68] "BSgenome.Hsapiens.UCSC.hg38"
	[69] "bsseq"
	[70] "bsseqData"
	[71] "c3net"
	[72] "ca"
	[73] "candisc"
	[74] "car"
	[75] "carData"
	[76] "catdata"
	[77] "Category"
	[78] "cba"
	[79] "cem"
	[80] "chron"
	[81] "CircStats"
	[82] "classInt"
	[83] "clisymbols"
	[84] "clusterExperiment"
	[85] "ClusterR"
	[86] "clv"
	[87] "cmprsk"
	[88] "CNEr"
	[89] "coda"
	[90] "coin"
	[91] "collections"
	[92] "combinat"
	[93] "CompQuadForm"
	[94] "ConsensusClusterPlus"
	[95] "coop"
	[96] "corpcor"
	[97] "coxme"
	[98] "crochet"
	[99] "csaw"
	[100] "csvy"
	[101] "cyclocomp"
	[102] "d3heatmap"
	[103] "DAAG"
	[104] "DataCombine"
	[105] "date"
	[106] "dbscan"
	[107] "debrowser"
	[108] "debugme"
	[109] "deldir"
	[110] "dendextend"
	[111] "denstrip"
	[112] "DEoptimR"
	[113] "Deriv"
	[114] "descr"
	[115] "DescTools"
	[116] "DESeq"
	[117] "details"
	[118] "DiagrammeR"
	[119] "DiffBind"
	[120] "diptest"
	[121] "DirichletMultinomial"
	[122] "DMRScan"
	[123] "dnet"
	[124] "doBy"
	[125] "doMC"
	[126] "DOT"
	[127] "dtw"
	[128] "dynamicTreeCut"
	[129] "DynDoc"
	[130] "dynlm"
	[131] "e1071"
	[132] "easyweb"
	[133] "EBSeq"
	[134] "EDASeq"
	[135] "edge"
	[136] "egg"
	[137] "ellipse"
	[138] "emdbook"
	[139] "emojifont"
	[140] "enc"
	[141] "energy"
	[142] "EnsDb.Hsapiens.v75"
	[143] "EnvStats"
	[144] "epivizr"
	[145] "epivizrData"
	[146] "epivizrServer"
	[147] "europepmc"
	[148] "evd"
	[149] "exactRankTests"
	[150] "ExperimentHubData"
	[151] "expm"
	[152] "Fahrmeir"
	[153] "fail"
	[154] "fastcluster"
	[155] "fastICA"
	[156] "fcuk"
	[157] "FD"
	[158] "FDb.InfiniumMethylation.hg19"
	[159] "fdrtool"
	[160] "feather"
	[161] "ff"
	[162] "ffpe"
	[163] "filehash"
	[164] "fit.models"
	[165] "fitdistrplus"
	[166] "flexclust"
	[167] "flexmix"
	[168] "FNN"
	[169] "formattable"
	[170] "forward"
	[171] "fpc"
	[172] "fracdiff"
	[173] "future"
	[174] "future.apply"
	[175] "gam"
	[176] "GAMBoost"
	[177] "gameofthrones"
	[178] "gamlss"
	[179] "gamlss.data"
	[180] "gamlss.dist"
	[181] "gbm"
	[182] "gbRd"
	[183] "gcite"
	[184] "gclus"
	[185] "gdata"
	[186] "gee"
	[187] "geepack"
	[188] "geneLenDataBase"
	[189] "geometry"
	[190] "ggdendro"
	[191] "ggplotify"
	[192] "ggpubr"
	[193] "ggridges"
	[194] "ggsci"
	[195] "ggsignif"
	[196] "ggvis"
	[197] "glmmML"
	[198] "glmnet"
	[199] "globals"
	[200] "gmodels"
	[201] "gmp"
	[202] "gnm"
	[203] "goodpractice"
	[204] "googlesheets"
	[205] "googleVis"
	[206] "goseq"
	[207] "GOstats"
	[208] "GPArotation"
	[209] "gpclib"
	[210] "graphite"
	[211] "gridBase"
	[212] "gridGraphics"
	[213] "GSE62944"
	[214] "GSEABase"
	[215] "gsl"
	[216] "gWidgets"
	[217] "gWidgetstcltk"
	[218] "Harman"
	[219] "harrypotter"
	[220] "heatmaply"
	[221] "heplots"
	[222] "HiddenMarkov"
	[223] "highlight"
	[224] "hmeasure"
	[225] "howmany"
	[226] "HSAUR"
	[227] "hunspell"
	[228] "hwriter"
	[229] "ica"
	[230] "ideal"
	[231] "igraphdata"
	[232] "IHW"
	[233] "IlluminaHumanMethylation450kanno.ilmn12.hg19"
	[234] "illuminaio"
	[235] "impute"
	[236] "ineq"
	[237] "influenceR"
	[238] "infotheo"
	[239] "inline"
	[240] "irr"
	[241] "isa2"
	[242] "ISOcodes"
	[243] "ISwR"
	[244] "jackstraw"
	[245] "janeaustenr"
	[246] "janitor"
	[247] "jcolors"
	[248] "jomo"
	[249] "js4shiny"
	[250] "KEGGgraph"
	[251] "KEGGREST"
	[252] "kernlab"
	[253] "kinship2"
	[254] "km.ci"
	[255] "KMsurv"
	[256] "laeken"
	[257] "Lahman"
	[258] "languageserver"
	[259] "lars"
	[260] "lavaan"
	[261] "leaps"
	[262] "leiden"
	[263] "lfa"
	[264] "libcoin"
	[265] "limSolve"
	[266] "linprog"
	[267] "lintr"
	[268] "listenv"
	[269] "listviewer"
	[270] "lobstr"
	[271] "locfdr"
	[272] "logspline"
	[273] "lokern"
	[274] "lpSolve"
	[275] "lpsymphony"
	[276] "lsei"
	[277] "lumi"
	[278] "magic"
	[279] "magick"
	[280] "mail"
	[281] "mailR"
	[282] "manipulate"
	[283] "manipulateWidget"
	[284] "mapdata"
	[285] "mapproj"
	[286] "maptools"
	[287] "maSigPro"
	[288] "Matching"
	[289] "MatchIt"
	[290] "matlab"
	[291] "matrixcalc"
	[292] "MatrixModels"
	[293] "maxLik"
	[294] "maxlike"
	[295] "maxstat"
	[296] "mbkmeans"
	[297] "mclust"
	[298] "mcmc"
	[299] "MCMCpack"
	[300] "mem"
	[301] "metap"
	[302] "methylumi"
	[303] "Mfuzz"
	[304] "mi"
	[305] "mice"
	[306] "microbenchmark"
	[307] "minet"
	[308] "minfi"
	[309] "misc3d"
	[310] "miscTools"
	[311] "mitml"
	[312] "mitools"
	[313] "mix"
	[314] "mixtools"
	[315] "mlbench"
	[316] "mnormt"
	[317] "mockery"
	[318] "modeltools"
	[319] "mondate"
	[320] "MPV"
	[321] "multcomp"
	[322] "multtest"
	[323] "MuMIn"
	[324] "mutoss"
	[325] "mvnormtest"
	[326] "mvtnorm"
	[327] "nleqslv"
	[328] "NLP"
	[329] "NMF"
	[330] "nomnoml"
	[331] "nor1mix"
	[332] "nortest"
	[333] "npsurv"
	[334] "nws"
	[335] "nycflights13"
	[336] "officer"
	[337] "oompaBase"
	[338] "OpenImageR"
	[339] "optmatch"
	[340] "ordinal"
	[341] "org.Cf.eg.db"
	[342] "org.Mm.eg.db"
	[343] "Organism.dplyr"
	[344] "oz"
	[345] "packrat"
	[346] "paletteer"
	[347] "palr"
	[348] "pals"
	[349] "pamr"
	[350] "pan"
	[351] "parmigene"
	[352] "parsedate"
	[353] "parsetools"
	[354] "partitions"
	[355] "party"
	[356] "pathview"
	[357] "pbapply"
	[358] "pbivnorm"
	[359] "pbmcapply"
	[360] "pcaExplorer"
	[361] "pcaPP"
	[362] "perm"
	[363] "permute"
	[364] "phylobase"
	[365] "pixmap"
	[366] "pkgcond"
	[367] "pkgmaker"
	[368] "PKI"
	[369] "PKPDmodels"
	[370] "plm"
	[371] "plotrix"
	[372] "pmml"
	[373] "pmmlTransformations"
	[374] "poLCA"
	[375] "polycor"
	[376] "polyester"
	[377] "polynom"
	[378] "postlogic"
	[379] "poweRlaw"
	[380] "prabclus"
	[381] "pracma"
	[382] "preprocessCore"
	[383] "prettycode"
	[384] "prismatic"
	[385] "profileModel"
	[386] "profvis"
	[387] "proto"
	[388] "proxy"
	[389] "pscl"
	[390] "psych"
	[391] "psygenet2r"
	[392] "purrrogress"
	[393] "PWMEnrich"
	[394] "qap"
	[395] "quadprog"
	[396] "qualV"
	[397] "quantmod"
	[398] "quantreg"
	[399] "qvcalc"
	[400] "R.matlab"
	[401] "r2d3"
	[402] "R2OpenBUGS"
	[403] "R2WinBUGS"
	[404] "randomForest"
	[405] "randomForestSRC"
	[406] "ranger"
	[407] "RANN"
	[408] "raster"
	[409] "rasterVis"
	[410] "rbounds"
	[411] "RcppParallel"
	[412] "RcppProgress"
	[413] "RcppRoll"
	[414] "Rcsdp"
	[415] "Rdpack"
	[416] "rdrop2"
	[417] "reactome.db"
	[418] "ReactomePA"
	[419] "readODS"
	[420] "redoc"
	[421] "registry"
	[422] "relimp"
	[423] "repr"
	[424] "reticulate"
	[425] "rfigshare"
	[426] "rgenoud"
	[427] "rgexf"
	[428] "rgl"
	[429] "Rgraphviz"
	[430] "rhub"
	[431] "RItools"
	[432] "rJava"
	[433] "rlecuyer"
	[434] "RMariaDB"
	[435] "rmatio"
	[436] "rmeta"
	[437] "Rmpfr"
	[438] "RMySQL"
	[439] "RnBeads"
	[440] "rncl"
	[441] "RNeXML"
	[442] "robust"
	[443] "robustbase"
	[444] "ROC"
	[445] "ROCR"
	[446] "Rook"
	[447] "roxygen2md"
	[448] "rpart.plot"
	[449] "rpf"
	[450] "rrcov"
	[451] "rsconnect"
	[452] "RSpectra"
	[453] "rstatix"
	[454] "Rsubread"
	[455] "rsvg"
	[456] "RSVGTipsDevice"
	[457] "Rtsne"
	[458] "rworldmap"
	[459] "rworldxtra"
	[460] "RXKCD"
	[461] "sampleSelection"
	[462] "sandwich"
	[463] "sankey"
	[464] "scalreg"
	[465] "scholar"
	[466] "scico"
	[467] "scrime"
	[468] "scRNAseq"
	[469] "sctransform"
	[470] "SDMTools"
	[471] "sem"
	[472] "semTools"
	[473] "sendmailR"
	[474] "seqLogo"
	[475] "seriation"
	[476] "sets"
	[477] "Seurat"
	[478] "sfsmisc"
	[479] "SGSeq"
	[480] "shapefiles"
	[481] "shinyBS"
	[482] "shinythemes"
	[483] "ShortRead"
	[484] "showtext"
	[485] "showtextdb"
	[486] "siggenes"
	[487] "simplegraph"
	[488] "slackr"
	[489] "slam"
	[490] "Sleuth2"
	[491] "sm"
	[492] "sn"
	[493] "snakecase"
	[494] "snm"
	[495] "SnowballC"
	[496] "snowfall"
	[497] "softImpute"
	[498] "sp"
	[499] "SparseM"
	[500] "spData"
	[501] "spelling"
	[502] "SRAdb"
	[503] "stabs"
	[504] "StanHeaders"
	[505] "stopwords"
	[506] "strucchange"
	[507] "SuppDists"
	[508] "supraHex"
	[509] "survey"
	[510] "survminer"
	[511] "survMisc"
	[512] "Sushi"
	[513] "svd"
	[514] "svgPanZoom"
	[515] "sysfonts"
	[516] "sysreqs"
	[517] "systemfit"
	[518] "systemPipeR"
	[519] "TCGAbiolinks"
	[520] "tensorA"
	[521] "testextra"
	[522] "testit"
	[523] "texPreview"
	[524] "TFBSTools"
	[525] "TFisher"
	[526] "TFMPvalue"
	[527] "TH.data"
	[528] "threejs"
	[529] "tidytext"
	[530] "timeDate"
	[531] "timeSeries"
	[532] "tis"
	[533] "tkrplot"
	[534] "tkWidgets"
	[535] "tm"
	[536] "tokenizers"
	[537] "topGO"
	[538] "travis"
	[539] "tree"
	[540] "triebeard"
	[541] "trimcluster"
	[542] "tripack"
	[543] "truncreg"
	[544] "TSA"
	[545] "tseries"
	[546] "tsne"
	[547] "TSP"
	[548] "TTR"
	[549] "tuber"
	[550] "tufte"
	[551] "TxDb.Hsapiens.UCSC.hg38.knownGene"
	[552] "TxDb.Mmusculus.UCSC.mm10.ensGene"
	[553] "TxDb.Mmusculus.UCSC.mm10.knownGene"
	[554] "tximport"
	[555] "ucminf"
	[556] "udapi"
	[557] "udunits2"
	[558] "units"
	[559] "UpSetR"
	[560] "urca"
	[561] "urltools"
	[562] "uroot"
	[563] "uwot"
	[564] "V8"
	[565] "vcdExtra"
	[566] "vegan"
	[567] "venn"
	[568] "verification"
	[569] "VGAM"
	[570] "VGAMdata"
	[571] "VIM"
	[572] "visNetwork"
	[573] "vsn"
	[574] "wateRmelon"
	[575] "WGCNA"
	[576] "whoami"
	[577] "widgetTools"
	[578] "wiggleplotr"
	[579] "wordcloud"
	[580] "xlsx"
	[581] "xlsxjars"
	[582] "xmlparsedata"
	[583] "xptr"
	[584] "xts"
	[585] "yesno"
	[586] "zeallot"
	[587] "zebrafishRNASeq"
	[588] "zinbwave"
	[589] "zipcode"