Lucas Czech lczech
💮
Postdoc in bioinformatics 🌱 and computer scientist 
working on inter-disciplinary ways to save the planet 🌍
working on inter-disciplinary ways to save the planet 🌍
lczech
/ extract_branch_placements.cpp
Last active
June 25, 2016 23:21
Extract lists of pquery names per branch of the reference tree, using genesis v0.7.0 (https://github.com/lczech/genesis).
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| /* | |
| Genesis - A toolkit for working with phylogenetic data. | |
| Copyright (C) 2014-2016 Lucas Czech | |
| This program is free software: you can redistribute it and/or modify | |
| it under the terms of the GNU General Public License as published by | |
| the Free Software Foundation, either version 3 of the License, or | |
| (at your option) any later version. | |
| This program is distributed in the hope that it will be useful, |
lczech
/ placement_classification_table.cpp
Last active
September 30, 2016 06:25
Write all placements of a jplace file into a list, including the closted leaf name of the tree, using genesis v0.11.0 (https://github.com/lczech/genesis).
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| /* | |
| Genesis - A toolkit for working with phylogenetic data. | |
| Copyright (C) 2014-2016 Lucas Czech | |
| This program is free software: you can redistribute it and/or modify | |
| it under the terms of the GNU General Public License as published by | |
| the Free Software Foundation, either version 3 of the License, or | |
| (at your option) any later version. | |
| This program is distributed in the hope that it will be useful, |
lczech
/ merge_jplace_files.cpp
Created
September 15, 2017 14:39
Merge jplace files, even if their reference trees have different branch lengths, using genesis v0.16.0 (https://github.com/lczech/genesis).
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| /* | |
| Genesis - A toolkit for working with phylogenetic data. | |
| Copyright (C) 2014-2017 Lucas Czech | |
| This program is free software: you can redistribute it and/or modify | |
| it under the terms of the GNU General Public License as published by | |
| the Free Software Foundation, either version 3 of the License, or | |
| (at your option) any later version. | |
| This program is distributed in the hope that it will be useful, |