lindenb

import gov.nih.nlm.ncbi.snp.geno.Individual;
import gov.nih.nlm.ncbi.snp.geno.SnpInfo;

import java.net.URL;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.zip.GZIPInputStream;

import javax.xml.bind.JAXBContext;

lindenb

/*
gcc -m64 -I package/sam/samtools-0.1.7a -L package/sam/samtools-0.1.7a jeter.c -lbam -lz
*/
#include <stdlib.h>
#include <stdio.h>
#include <assert.h>
#include "bam.h"
#include "sam.h"
 
int main(int argc, char *argv[]) {

lindenb

/**
 * Author: Pierre Lindenbaum PhD
 * WWW: http://plindenbaum.blogspot.com
 * Motivation:
 * 	Given a gene, identify the world experts
 * 	http://biostar.stackexchange.com/questions/4296
 */
import java.net.URLEncoder;
import java.text.Collator;
import java.util.ArrayList;

lindenb

/**
 * Delicious2Diigo
 *
 * Author:
 *    Pierre Lindenbaum
 *    http://plindenbaum.blogspot.com
 *
 * Motivation:
 *    save bookmarks from delicious to diigo using the Diigo API.
 *  

lindenb

/**
 * Author:
 *    Pierre Lindenbaum
 * Mail:
 *    [email protected]
 * WWW:
 *    http://plindenbaum.blogspot.com
 * Motivation:
 *    my first Node.js script . translate a DNA to a protein
 * Usage:

lindenb

#include <stdio.h>
#include <ctype.h>
static const char* STD_GENETIC_CODE="FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG";

static int base2index(int c)
   {
   switch(c)
         {
         case 'T':case 't': return 0;
         case 'C':case 'c': return 1;

lindenb

cxf.lib=apache-cxf-2.3.1/lib
all:
	mkdir -p translate/WEB-INF/lib
	javac -d translate/WEB-INF/classes -sourcepath translate/WEB-INF/classes translate/WEB-INF/classes/bio/TranslateImpl.java
	cp 	${cxf.lib}/cxf-2.3.1.jar \
		${cxf.lib}/geronimo-activation_1.1_spec-1.1.jar \
		${cxf.lib}/geronimo-annotation_1.0_spec-1.1.1.jar \
		${cxf.lib}/geronimo-javamail_1.4_spec-1.7.1.jar \
		${cxf.lib}/geronimo-servlet_3.0_spec-1.0.jar \
		${cxf.lib}/geronimo-ws-metadata_2.0_spec-1.1.3.jar \

lindenb

<?xml version='1.0'  encoding="ISO-8859-1"?>
<xsl:stylesheet
	xmlns:xsl='http://www.w3.org/1999/XSL/Transform'
	version='1.0'
	>
<xsl:param name="layout">ref</xsl:param>
<!--


Author:

lindenb

/**
http://stackoverflow.com/questions/4684930

javac Test.java
java Test
*/
import javax.xml.parsers.*;
public class Test
   {
   public static void main(String args[])

lindenb

/**
 * Pierre Lindenbaum
 * Simple test for OAUth with the Scribe library
 */

import javax.swing.JOptionPane;

import org.scribe.builder.ServiceBuilder;
import org.scribe.builder.api.TwitterApi;
import org.scribe.model.OAuthRequest;