linminhtoo

minhtoo@minhtoo:~/.nextflow/capsule/deps$ jstack 63923
2024-01-23 02:54:51
Full thread dump OpenJDK 64-Bit Server VM (17.0.6+10-LTS mixed mode, sharing):

Threads class SMR info:
_java_thread_list=0x00007f46f0001890, length=38, elements={
0x00007f4748028010, 0x00007f4748167420, 0x00007f4748168800, 0x00007f4748177b10,
0x00007f4748178ec0, 0x00007f474817a2d0, 0x00007f474817bd00, 0x00007f474817d230,
0x00007f474817e6a0, 0x00007f47481b30f0, 0x00007f47481b5050, 0x00007f4748fc0990,
0x00007f474892a1c0, 0x00007f4748de2880, 0x00007f4749203220, 0x00007f47494b6d80,

linminhtoo

Jan-23 02:39:35.355 [main] DEBUG nextflow.cli.Launcher - $> nextflow run genepi/nf-gwas -r v1.0.4 -profile test,docker
Jan-23 02:39:35.404 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 23.10.1
Jan-23 02:39:35.422 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/home/minhtoo/.nextflow/plugins; core-plugins: [email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected]
Jan-23 02:39:35.429 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Jan-23 02:39:35.430 [main] INFO  o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Jan-23 02:39:35.432 [main] INFO  org.pf4j.DefaultPluginManager - PF4J version 3.4.1 in 'deployment' mode
Jan-23 02:39:35.440 [main] INFO  org.pf4j.AbstractPluginManager - No plugins
Jan-23 02:39:35.452 [main] DEBUG nextflow.scm.ProviderConfig - Using SCM config path: /home/minhtoo/.nextflow/scm
Jan-23 02:

linminhtoo

2023-08-22 18:58:05,566 Running colabfold 1.3.0 (26de12d3afb5f85d49d0c7db1b9371f034388395)
2023-08-22 18:58:28,127 Unable to initialize backend 'tpu_driver': NOT_FOUND: Unable to find driver in registry given worker: 
2023-08-22 18:58:28,382 Unable to initialize backend 'tpu': INVALID_ARGUMENT: TpuPlatform is not available.
2023-08-22 18:58:35,545 generated new fontManager
Traceback (most recent call last):
  File "/g/data/if89/apps/colabfold_batch/1.4.0/python3/3.9.2/bin/colabfold_batch", line 8, in <module>
    sys.exit(main())
  File "/g/data/if89/apps/colabfold_batch/1.4.0/python3/3.9.2/lib/python3.9/site-packages/colabfold/batch.py", line 1728, in main
    run(
  File "/g/data/if89/apps/colabfold_batch/1.4.0/python3/3.9.2/lib/python3.9/site-packages/colabfold/batch.py", line 1210, in run

linminhtoo

2022-05-09 06:05:52.196 | INFO     | __main__:<module>:251 - conv time: 0.3250s
2022-05-09 06:05:52.196 | INFO     | __main__:<module>:252 - backprop time: 2.8490s
2022-05-09 06:05:52.196 | INFO     | __main__:<module>:253 - prediction time: 0.6112s
2022-05-09 06:05:52.197 | INFO     | __main__:<module>:254 - iteration time: 3.4713s
2022-05-09 06:05:52.197 | INFO     | __main__:<module>:255 - preprocess time: 0.0104s
2022-05-09 06:05:52.197 | INFO     | __main__:<module>:256 - memory usage: 1962986564.9562
  0%|          | 0/66 [00:00<?, ?it/s]2022-05-09 06:05:52.967 | INFO     | data_iteration:iterate:195 - clearing CUDA memory
loss_plb_batch: 0.01481, loss_aux_batch: 0.00142, loss_plb_batch (unscaled): 1.81466:   9%|▉         | 6/66 [00:04<00:37,  1.60it/s]2022-05-09 06:05:56.900 | INFO     | data_iteration:iterate:195 - clearing CUDA memory
loss_plb_batch: 0.01408, loss_aux_batch: 0.00130, loss_plb_batch (unscaled): 1.72521:  18%|█▊        | 12/66 [00:07<00:32,  1.68it/s]2022-05-09 06:06:00.618 | INFO     

linminhtoo

<data>
	<engine version="2.1.6" name="defq1"/>
	<game name="DQ1"/>
	<version number="0.0.0"/>
	<demo_mode value="false"/>
	<party>
		<class_entry value="mcguffin">
			<character hero="true" sex="null" handle="mcguffin" name="Lin">
				<info xp="69854" level="60"/>
				<skills points="0">

linminhtoo

SystemData
{
  OS : Windows 10 (Pre-release)
  RAM: 12469292 KB (11.89 GB)
  CPU: Intel(R) Core(TM) i7-4720HQ CPU @ 2.60GHz
  GPU: NVIDIA GeForce GTX 950MIntel(R) HD Graphics 4600, driver v. 22.21.13.847620.19.15.4549
}
--------------------------------------
game id:	DQ1
filename:	DefendersQuest

linminhtoo

<data>
	<engine version="2.1.6" name="defq1"/>
	<game name="DQ1"/>
	<version number="0.0.0"/>
	<demo_mode value="false"/>
	<party>
		<class_entry value="mcguffin">
			<character hero="true" sex="null" handle="mcguffin" name="Lin">
				<info xp="69854" level="60"/>
				<skills points="0">

linminhtoo

SystemData
{
  OS : Windows 10 (Pre-release)
  RAM: 12469292 KB (11.89 GB)
  CPU: Intel(R) Core(TM) i7-4720HQ CPU @ 2.60GHz
  GPU: NVIDIA GeForce GTX 950MIntel(R) HD Graphics 4600, driver v. 22.21.13.847620.19.15.4549
}
--------------------------------------
game id:	DQ1
filename:	DefendersQuest

linminhtoo

<data>
	<engine version="2.1.6" name="defq1"/>
	<game name="DQ1"/>
	<version number="0.0.0"/>
	<demo_mode value="false"/>
	<party>
		<class_entry value="mcguffin">
			<character hero="true" sex="null" handle="mcguffin" name="Lin">
				<info xp="69854" level="60"/>
				<skills points="0">

linminhtoo

SystemData
{
  OS : Windows 10 (Pre-release)
  RAM: 12469292 KB (11.89 GB)
  CPU: Intel(R) Core(TM) i7-4720HQ CPU @ 2.60GHz
  GPU: NVIDIA GeForce GTX 950MIntel(R) HD Graphics 4600, driver v. 22.21.13.847620.19.15.4549
}
--------------------------------------
game id:	DQ1
filename:	DefendersQuest