mattearnshaw

<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<neuroml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.neuroml.org/schema/neuroml2" id="PINGNet_10" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd">
    <notes>

This NeuroML 2 file was generated by OpenCortex v0.1.6 using: 
    libNeuroML v0.2.34
    pyNeuroML v0.3.1

    </notes>
    <property tag="Network seed" value="12345"/>

mattearnshaw

diff --git a/generator/java.stoneg.py b/generator/java.stoneg.py
index dda20b58..38df2fe8 100644
--- a/generator/java.stoneg.py
+++ b/generator/java.stoneg.py
@@ -49,8 +49,8 @@ from stone.data_type import (
     Void,
 )
 
-class StoneType:
-    __metaclass__ = abc.ABCMeta

mattearnshaw

        create3DCylinderFromNode: function (cylNode, material, minRadius, maxRadius) {

            var bottomBasePos = new THREE.Vector3(cylNode.position.x, cylNode.position.y, cylNode.position.z);
            var topBasePos = new THREE.Vector3(cylNode.distal.x, cylNode.distal.y, cylNode.distal.z);
            
            var topRadius = cylNode.topRadius;
            var bottomRadius = cylNode.bottomRadius;
            
            var axis = new THREE.Vector3();
            axis.subVectors(topBasePos, bottomBasePos);

mattearnshaw

<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<neuroml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.neuroml.org/schema/neuroml2" id="NeuroML_2_loaded_via_LEMS_by_Geppetto" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd">
    <ionChannel species="non_specific" type="ionChannelHH" conductance="10pS" id="ih_rod">
        <notes>Single ion channel description, adapted from Liu XD, Kourennyi DE (2004) Effects of tetraethylammonium on Kx channels and simulated light response in rod photoreceptors. Ann Biomed Eng 32:1428-42</notes>
        <gateHHrates instances="1" id="n">
            <forwardRate type="HHExpRate" rate="1per_s" midpoint="-82mV" scale="-10.66mV"/>
            <reverseRate type="HHExpRate" rate="1per_s" midpoint="-82mV" scale="10.66mV"/>
        </gateHHrates>
    </ionChannel>
    <ionChannel species="k" type="ionChannelHH" conductance="10pS" id="kv_rod

mattearnshaw

<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<neuroml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.neuroml.org/schema/neuroml2" id="NeuroML_2_loaded_via_LEMS_by_Geppetto" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd">
    <ionChannelHH type="ionChannelPassive" conductance="10pS" id="passiveChan">
        <notes>Single ion channel in NeuroML2 format: passive channel providing a leak conductance </notes>
    </ionChannelHH>
    <ionChannelHH species="na" conductance="10pS" id="naChan">
        <notes>Single ion channel in NeuroML2 format: standard Sodium channel from the Hodgkin Huxley model</notes>
        <gateHHrates instances="3" id="m">
            <forwardRate type="HHExpLinearRate" rate="1per_ms" midpoint="-40mV" scale="10mV"/>
            <reverseRate type="HHExpRate" rate="4per_ms" midpoint="-65mV" scale="-18mV"/>

mattearnshaw

(ns babbitt.core
  (:require [clojure.math.combinatorics :as combo]))

; insert n at index i in x
; (insert 5 1 [2]) => [2 5]
(defn insert [n i x]
  (let [[before after] (split-at i x)]
    (vec (concat before [n] after))))

; insert ns at indices js in x