Matthew Feickert matthewfeickert

Regression in jaxlib v0.1.58 for jax.scipy.special.gammaln for CPU

In pyhf we've noticed one of our unit tests that was passing for jax v0.2.7 and jaxlib v0.1.57, however, with the release of jaxlib v0.1.58 it has started failing. We've narrowed it down to being for jaxlib v0.1.58 with jax_enable_x64=True in CPU mode (aka, where our unit test run).

Minimal Reproducible Example

In a fresh Python 3.8 virtual environment

Bug Report for pyAMI provenance node structure inconsistency between Python 2 and Python 3

I'm seeing a bug between pyAMI v5.1.2 on CVMFS with inconsistent return structure for the provenance node dicts. The docs mention that for the pyAMI.atlas.api.get_dataset_prov API the return should be

a map of python dictionnaries. The key "node" gives a list of dataset with the distance to the given dataset and the key "edge" gives the list of successive pairs of input an output datasets.

This is true for Python 2.7, but for Python 3 the return structure is inconsistent with some datasets in the provenance node list having a return of

Stacked Bar Plot Example

Summary

This is an example of how to create a stacked bar plot with percent family from a fish data set. Using this example you will be able to take a full data set and compute the family proportions just before plotting without the need to save a new dataframe.

	FROM ubuntu:20.04

	RUN apt-get update -y && \
	apt-get install -y \
	fontconfig \
	fonts-dejavu \
	fonts-freefont-ttf \
	python3 \
	python3-dev \
	python3-pip \

	FROM ubuntu:20.04

	RUN apt-get update -y && \
	apt-get install -y \
	fontconfig \
	fonts-dejavu \
	fonts-freefont-ttf \
	python3 \
	python3-dev \
	python3-pip \

	name: Deploy build

	on:
	push:
	branches:
	- main
	tags:
	- v*

	jobs: