mattsouth

# All samples
sample_groups().each do |grp|
  print "\n###### :#{grp} ######\n"
  sample_names(grp).each do |smp|
    print smp
    sample smp
    sleep sample_duration smp
  end
end

mattsouth

{
    "NHSNumber" : "18243291",
    "_id" : ObjectId("1111a2ddaddd832311"),
    "accessPrivilege" : "Participant",
    "clinicians" : [
        {
            "firstName" : "Clint",
            "lastName" : "Ician",
            "tcid" : 13,
            "title" : "Mr"

mattsouth

<contacts>
  <NHSNumber>18243291</NHSNumber>
  <_id>1111a2ddaddd832311</_id>
  <accessPrivilege>Participant</accessPrivilege>
  <clinicians>
    <list>
      <item>
        <firstName>Clint</firstName>
        <lastName>Ician</lastName>
        <tcid>13</tcid>

mattsouth

<?xml version="1.0" encoding="UTF-8"?>
<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
    xmlns:xs="http://www.w3.org/2001/XMLSchema"
    version="2.0"
    >
    <!-- 
    Notes:
        created-by: MJS ([email protected])
        created-on: 1st May 2015
        Need to insert this line to 2nd line of xnat schema to instruct XSLT Processor:

mattsouth

#!/bin/bash
# uploads dicom images for a particular subject session to the tng xnat instance
# takes five parameters:
# 1: username - xnat username
# 2: password - xnat password
# 3: project - project id
# 4: scan date - session date e.g. '01/02/14'
# 5: directory - the subdirectory that contains the session files
#
# Assumptions!

mattsouth

#!/bin/bash
# works through the current directory (assumed of sessions with subdirectories of scans) for unmapped scan types
function mapType {
  if [[ "$1" == DTI_* ]]; then
		type='DTI'
  elif [[ "$1" == ep-moco-nav-set* ]]; then
    type='Navigator'
  elif [[ "$1" == fieldmap_* ]]; then
    type='FieldMap'
  elif [[ "$1" == gre_0.8inplane_5mm_* ]]; then

mattsouth

#!/bin/bash
# uploads dicom images for a particular subject session to the tng xnat instance
# takes five parameters:
# 1: username - xnat username
# 2: password - xnat password
# 3: project - project id
# 4: scan date - session date e.g. '01/02/14'
# 5: directory - the subdirectory that contains the session files
#
# Assumptions!

mattsouth

#!/bin/bash
# uploads dicom images for a particular subject session to the tng xnat instance
# takes five arguments:
# 1: username - xnat username
# 2: password - xnat password
# 3: project - xnat project id
# 4: directory - the subdirectory that contains the session scan sud-directories
# 5: subject_id - the subject id associated with the session scan
#
# Assumptions!

mattsouth

#!/bin/bash
# uploads dicom images for a set of subject sessions to the tng xnat instance
# takes three parameters:
# 1: csv - the filename a csv file that contains three columns:
#   a: subject_id
#   b: directory
#   c: scan date
# 2: xnat-username
# 3: xnat-password
# 4: xnat-project_id

mattsouth

---
# file: munin-monitoring.yml
# install munin master that monitors itself on ubuntu 14.04
# and uses apache and fast-cgi (for the dynamic zooming graphs)
# to host dashboard
- hosts: monitoring
  handlers:
  - name: restart munin-node
    service: name=munin-node state=restarted
  - name: restart apache2