Michael Aufreiter michael

The Tahi Article Format

Note: The following spec is considered a draft and open for discussion.

Tahi Source XML

Content in Tahi is considered data. That data lives in several places: Figures and references are considered external resources that live in separate DB tables. The main content however is expressed in XML using a strict schema. By choosing XML, we can utilize toolchains for automated data processing (e.g XSLT for normalizing content, server side maintenance scripts, etc.).

Goals:

TAHI Article Format Specification

Top level article structure

HTML

<article>
  <head>
    <title>Article short title</title>

See local available dist images (they are stored locally around 400mb size they have)

vagrant box list

To create a new vagrant env do this:

vagrant init

Now edit Vagrantfile

	class Toolbar extends React.Component {
	render() {
	return $$("div", { className: "toolbar"},
	$$(TextToolComponent, { tool: 'text', title: 'Switch text'}),
	$$(ToolComponent, { tool: 'emphasis', classNames: ['button', 'tool']}, "Emphasis"),
	$$(ToolComponent, { tool: 'strong', classNames: ['button', 'tool']}, "Strong")
	);
	}
	}

	/* Variables
	-------------------------------------------------- */

	$border-color: #ddd;
	$fill-light-color: #f8f8f8;
	$fill-white-color: #fff;
	$fill-dark-color: #404040;

	/* Mixins
	-------------------------------------------------- */

	<html>
	<head>
	<!-- no title annotations possible with meta tags so moved into html body -->
	<!-- no abstract annotations possible with meta tags so moved into html body -->
	<meta name="doi" content="10.1234/myJournal.00001"/>
	<meta name="status" content="in-review"/>
	<meta name="creator" content="userx"/>
	<meta name="created-at" content="2015-05-12T08:20:19.657Z"/>
	<meta name="updated-at" content="2015-05-13T04:18:42.657Z"/>
	</head>

	<article>
	<head id="document">
	<title>Article short title</title>
	<doi>10.7554/eLife.00005</doi>
	</head>
	<body id="content">
	<h1 id="h1">Level 1 heading</h1>
	<p>
	The <em>PRC2 complex</em> has been the focus of a significant number of biochemical and molecular studies (for a recent review see
	<ref ref-type="reference" rid="ref13">Margueron and Reinberg, 2011</ref>) ...

	michael ~/projects/lens-elife [lens-official] $ substance --update
	Cloning sub-module: node_modules/substance-application
	Creating folder: /Users/michael/projects/lens-elife/node_modules
	Cloning into 'substance-application'...
	remote: Counting objects: 598, done.
	remote: Total 598 (delta 0), reused 0 (delta 0), pack-reused 598
	Receiving objects: 100% (598/598), 97.95 KiB \| 0 bytes/s, done.
	Resolving deltas: 100% (351/351), done.
	Checking connectivity... done.
	Cloning sub-module: node_modules/substance-data

	var ENTITIES = [
	// Prisons
	{"id":"54ef1331afda2d3c024e4818","type":"prison","name":"неизвестно /Австрия","nearest_locality":"неизвестно","country":"Австрия","description":"Респондент В. В. Щебетюк (ID 40) не помнит название села, куда был доставлен в сотаве 20 остарбайтеров. Жили в специальном охраняемым помещении, откуда их выводили на работы. Щебетюк был занят на полевых работах. В селе в том числе содержались поляки-военнопленные. ","__v":0,"prison_type":["частная сельскохозяйственная ферма"],"synonyms":["неизвестно /Австрия","\"работали в Австрии\"; \"не помню даже село\"; \"большой бауэр"," который имел более сто гектаров земли"," ферму большую и в деревне шоколадную фабрику\"; \"В селе"," значит"," там были военнопленные","\nвоеннопленные – польские\"; \"Работали у этого бауэра на полю\""],"id":"54ef1331afda2d3c024e4818"},{"id":"54ef1331afda2d3c024e4817","type":"prison","name":"Гоппенраде","nearest_locality":"Гоппенраде","country":"Германия","description":"город в земле Мекленбург-Передняя Померани

	[
	{
	"property": "subjects",
	"name": "Subjects",
	"values": [
	{
	"frequency": 16,
	"name": "Developmental biology and stem cells",
	"selected": false
	},