Created
January 14, 2010 21:56
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| read_per_genome | n50 | |
|---|---|---|
| 800000 | 218474 | |
| 400000 | 663882 | |
| 266666 | 598730 | |
| 200000 | 663862 | |
| 160000 | 360019 |
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| library(ggplot2) | |
| data <- read.csv("n50.csv") | |
| plot <- ggplot(data, aes(x=read_per_genome/1000,y=n50/1000)) + | |
| geom_line() + | |
| scale_x_continuous("Reads per 6.9 MB genome (000s)") + | |
| scale_y_continuous("N50 contig size (KBp)") | |
| postscript("out/n50.eps",width=10,height=6,onefile=FALSE,horizontal=FALSE, paper = "special",colormodel="rgb") | |
| print(plot) | |
| graphics.off() |
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