Mengjuei Hsieh mjhsieh
mjhsieh
/ gist:3d35fde8686ca4631ab3
Created
December 8, 2014 17:22
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| $ cat analysis/bin/saxonb9 analysis/bin/smrtreporter analysis/bin/referenceUploader | |
| #!/bin/bash | |
| # Source the smrtanalysis setup.sh file | |
| . $($(dirname $(readlink -f "$0"))/../../admin/bin/getsetupfile) | |
| JAVA=${SMRT_TOPDIR}/redist/java/bin/java | |
| JAVA_OPTIONS="-Xmx72m -Xms4m" | |
| $JAVA $JAVA_OPTIONS -jar $ASSEMBLY_HOME/lib/saxonb9-1-0-1j/saxon9.jar "$@" | |
| #!/bin/bash |
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| $ vagrant ssh | |
| Welcome to Ubuntu 14.04.1 LTS (GNU/Linux 3.13.0-39-generic x86_64) | |
| * Documentation: https://help.ubuntu.com/ | |
| System information as of Sun Dec 14 18:06:00 UTC 2014 | |
| System load: 0.37 Processes: 100 | |
| Usage of /: 2.7% of 39.34GB Users logged in: 0 | |
| Memory usage: 10% IP address for eth0: 10.0.2.15 |
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