Paul Hoffman mojaveazure

mojaveazure / soNeedy.sh

Last active April 29, 2019 18:20

A simple script to copy files defined by a list in parallel

	#!/bin/bash

	set -e
	set -u
	set -o pipefail

	# A simple script to find files listed in a text file and copy them elsewhere
	# Written for Chaochih Liu
	# Written by Paul Hoffman

mojaveazure / fakeHeader.sh

Last active October 16, 2018 21:57

A simple script to add the `@HD` header line to a SAM or BAM file in case it wasn't added at the time of creation.

	#!/bin/bash

	set -e
	set -u
	set -o pipefail

	# Define the usage message
	function usage() {
	echo -e "\
	Usage: ./fakeHeader.sh <option> <file> \n\