Naoki Orii mrorii

mrorii / gist:3860197

Created October 9, 2012 17:27

simple script for plotting precision recall curves

	#!/usr/bin/env python

	"""Usage:
	python plot_pr_curve.py
	"""

	import sys
	import numpy as np
	import pylab as pl
	from sklearn.metrics import precision_recall_curve

mrorii / gist:2968045

Created June 21, 2012 19:42

	select
	count(i.id)
	from
	interactions i,
	interaction2externals i2e,
	interaction2types i2t
	where
	i2e.interaction_id = i.id
	and i2e.dbsource_id = 5
	and i2e.external_id = i2t.external_id

mrorii / .vimrc

Created April 17, 2012 21:16

	syntax on
	" syntax enable
	filetype plugin indent on

	nnoremap <Space>. :<C-u>edit $MYVIMRC<Enter>
	nnoremap <Space>s. :<C-u>source $MYVIMRC<Enter>

	"--------------------------------
	" cho45 settings
	" refer to https://github.com/cho45/dotfiles/blob/master/.vimrc

mrorii / gist:2368839

Created April 12, 2012 16:27



	[orii@severus vim73]$ export CPPFLAGS="-I/home/orii/local/include"
	[orii@severus vim73]$ export LDFLAGS="-L/home/orii/local/lib"
	[orii@severus vim73]$
	[orii@severus vim73]$ ./configure --prefix=/home/orii/local


	curse
	ncurses

mrorii / gist:2254952

Created March 30, 2012 20:59

	# set-option -g default-terminal screen-256color
	# Set the prefix to ^T.
	unbind C-b
	set -g prefix ^T
	bind t send-prefix

	set-window-option -g utf8 on # Necessary for Japanese environments?
	set-window-option -g mode-keys vi # Key map for copy mode. Default is emacs.

mrorii / gist:2254707

Created March 30, 2012 20:21

mrorii / gist:1392514

Created November 24, 2011 23:32

mrorii / gist:1360912

Created November 12, 2011 18:29

	# Set the prefix to ^T.
	unbind C-b
	set -g prefix ^T
	bind t send-prefix

	set-window-option -g mode-keys vi # Key map for copy mode. Default is emacs.

mrorii / gist:1338700

Created November 4, 2011 05:06

overview of mvc

	# Model
	def get_biomedical_impact_score_for(self, gene_id1, gene_id2):
	dbh = get_db_handler(...)
	score = dbh.execute("SELECT score FROM foobar WHERE gene_id1 = ? AND gene_id2 = ?",
	gene_id1, gene_id2)
	return score

	def get_name_for(self, gene_id):
	dbh = get_db_handler(...)
	name = dbh.execute("SELECT name FROM baz WHERE gene_id = ?", gene_id)

mrorii / vimrc

Created November 1, 2011 23:16

	set nocompatible " be iMproved
	filetype off " required!

	set rtp+=~/.vim/bundle/vundle/
	call vundle#rc()

	" let Vundle manage Vundle
	" required!
	Bundle 'gmarik/vundle'