muppetjones

syntax enable
filetype plugin indent on
colorscheme delek

" Use Vim settings, rather then Vi settings (much better!).
" This must be first, because it changes other options as a side effect.
set nocompatible

" ================ General Config ====================

muppetjones

Etch-a-mouse

NOTE: This gist is deprecated. I've moved everything into /users/muppetjones, and I have an open PR on the QMK repo. Eventually, this will probably be merged, and I'll (hopefully) remember to update this note.

muppetjones

/* (Optional) Define RGB settings in your config.h */ 
#ifdef RGBLIGHT_ENABLE
#    define RGBLIGHT_ANIMATIONS
#    define RGBLIGHT_HUE_STEP 8
#    define RGBLIGHT_SAT_STEP 8
#    define RGBLIGHT_VAL_STEP 8
#    define RGBLIGHT_LIMIT_VAL 150
#    define RGBLIGHT_SLEEP
// #    define RGBLIGHT_LAYERS  // We do NOT need the layers!
#endif

muppetjones

#!/usr/bin/env python3
"""Example SystemExit edge case.

Try:except blocks should always be as explicit as possible about the errors
the catch; however, sometimes you really just need to catch anything. When
this "anything" happens, always catch "Exception" -- never use a bare except.

"But a bare except is the only way to catch everything", you say?

Nope. You just need to be more explicit: SystemExit, KeyboardInterrupt,

muppetjones

#!/usr/bin/env python3
"""Print size of columns.

Usage:

    $ python3 colsize.py ./ref_uniprot.csv
    id: (1, 6)
    ensembl_transcript_id: (0, 15)
    feature_type: (4, 35)
    feature_desc: (0, 747)

muppetjones

#!/bin/bash
# Run this script in project root--expected structure: `./fastqc/<sample>/*.zip`
# This script aggregates images of each type in individual folders
# o looking across data is quick.

zips=`ls fastqc/*/*.zip`

for i in $zips; do
    unzip -oq -d "$(dirname "$i")" $i;
done

muppetjones

#!/bin/tcsh 
#v3.91
########################################################################

# WHERE ARE ALL THE kSNP SCRIPTS?  
# IF YOU INSTALLED kSNP ANYWHERE OTHER THAN /user/local THEN YOU MUST MODIFY THIS TO POINT TO THE DIRECTORY WHERE YOU HAVE INSTALLED kSNP SCRIPTS
set kSNP=/usr/local/kSNP3
#set kSNP=/g/g15/shea/kSNP3_Source

########################################################################

muppetjones

#!/bin/bash
# Perform a local install of a variety of useful (e.g., necessary) softwares
#
# Ever had to use a server and found yourself frustrated due to lack of
# root access or simply not being able/allowed to modify the setup?
#   Never fear!
#
# This script does the following:
#   * Modifies *.vimrc to include line numbers and set tabs to four spaces
#   * Install gcc-4.5.4 (and other required)

muppetjones

// slate_rotateApp.js
// Stephen J. Bush
// This snippet for slate js allows switching between a group of apps with a single keystroke.
// FIXED: Binding failed if an app in the list is not open.
// FIXED: Window object undefined for some apps or if window minimized.
// UPDATE: [12.05.14] Rotate now returns to the last used app in the group before rotating.
//         NOTE: This only works when using the key binding as the 'windowFocused' event does not reliably trigger.
// TODO: Rotate between open windows for each app.

/*