John Muschelli muschellij2
muschellij2
/ gist:4606458
Created
January 23, 2013 14:31
Modifications to forestplot2 from package rmeta in R (CRAN)
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| forestplot2 <- function (labeltext, mean, lower, upper, align = NULL, is.summary = FALSE, | |
| clip = c(-Inf, Inf), xlab = "", zero = 0, graphwidth = unit(2, | |
| "inches"), col = meta.colors(), xlog = FALSE, xticks = NULL, | |
| boxsize = NULL, fontsize=5, xrange=NULL, add=FALSE, cgap = unit(8, "mm"), type="rect", ...) | |
| { | |
| require("grid") || stop("`grid' package not found") | |
| require("rmeta") || stop("`rmeta' package not found") | |
| drawNormalCI <- function(LL, OR, UL, size, boxcol, linecol, itype) { | |
| circle <- ifelse(itype == "circle", TRUE, FALSE) | |
| size = 0.75 * size |
muschellij2
/ gist:4773311
Created
February 12, 2013 20:55
How to read data into a data.frame for Baltimore City 311 system.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| rm(list=ls()) | |
| library(XML) | |
| library(RJSONIO) | |
| library(stringr) | |
| ff <- url("http://311.baltimorecity.gov/open311/v2/requests.json?api&jurisdiction_id=baltimorecity.gov") | |
| x <- readLines(ff) | |
| close(ff) | |
| J <- fromJSON(x, asText=TRUE ) |
muschellij2
/ rgl_vtk_example
Created
March 10, 2013 00:44
Minimal working example for vtk export that got "cut off"
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| rm(list=ls()) | |
| require(misc3d) | |
| f <- function(x, y, z) x^2+y^2+z^2 | |
| x <- seq(-2,2,len=20) | |
| ball <- contour3d(f,4,x,x,x, draw=FALSE) | |
| drawScene.rgl(ball) | |
| ### get the triangles | |
| allids <- rgl.ids() | |
| id <- allids$id[allids$type == "triangles"] |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| library(oro.nifti) | |
| img <- readNIfTI("MNI152_T1_2mm_brain.nii.gz") | |
| image(x, z=40, plot.type="single") | |
| arr <- [email protected] |
muschellij2
/ matplotVis-excerpt.R
Last active
December 15, 2015 19:19
Example code from matplotVis() for healthvis package in R
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| require(RJSONIO) | |
| classes <-sapply(data, class) | |
| nr <- nrow(data) | |
| cn <- colnames(data) | |
| ll <- vector("list", length=nr) | |
| for (irow in 1:nr) ll[[irow]] <- data[irow,] | |
| dropouts <- cn[classes != "numeric"] | |
| n <- sum(classes=="numeric") |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!doctype HTML> | |
| <meta charset = 'utf-8'> | |
| <html> | |
| <head> | |
| <script src='http://ramnathv.github.io/rCharts/libraries/widgets/polycharts/js/polychart2.standalone.js' type='text/javascript'></script> | |
| <style> | |
| .rChart { | |
| display: block; |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!doctype HTML> | |
| <meta charset = 'utf-8'> | |
| <html> | |
| <head> | |
| <link rel='stylesheet' href='http://nvd3.org/src/nv.d3.css'> | |
| <script src='http://ajax.googleapis.com/ajax/libs/jquery/1.8.2/jquery.min.js' type='text/javascript'></script> | |
| <script src='http://d3js.org/d3.v3.min.js' type='text/javascript'></script> | |
| <script src='http://timelyportfolio.github.io/rCharts_nvd3_tests/libraries/widgets/nvd3/js/nv.d3.min-new.js' type='text/javascript'></script> | |
| <script src='http://nvd3.org/lib/fisheye.js' type='text/javascript'></script> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!doctype HTML> | |
| <meta charset = 'utf-8'> | |
| <html> | |
| <head> | |
| <link rel='stylesheet' href='http://nvd3.org/src/nv.d3.css'> | |
| <script src='http://ajax.googleapis.com/ajax/libs/jquery/1.8.2/jquery.min.js' type='text/javascript'></script> | |
| <script src='http://d3js.org/d3.v3.min.js' type='text/javascript'></script> | |
| <script src='http://timelyportfolio.github.io/rCharts_nvd3_tests/libraries/widgets/nvd3/js/nv.d3.min-new.js' type='text/javascript'></script> | |
| <script src='http://nvd3.org/lib/fisheye.js' type='text/javascript'></script> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!doctype HTML> | |
| <meta charset = 'utf-8'> | |
| <html> | |
| <head> | |
| <link rel='stylesheet' href='http://nvd3.org/src/nv.d3.css'> | |
| <script src='http://ajax.googleapis.com/ajax/libs/jquery/1.8.2/jquery.min.js' type='text/javascript'></script> | |
| <script src='http://d3js.org/d3.v3.min.js' type='text/javascript'></script> | |
| <script src='http://timelyportfolio.github.io/rCharts_nvd3_tests/libraries/widgets/nvd3/js/nv.d3.min-new.js' type='text/javascript'></script> | |
| <script src='http://nvd3.org/lib/fisheye.js' type='text/javascript'></script> |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!doctype HTML> | |
| <meta charset = 'utf-8'> | |
| <html> | |
| <head> | |
| <link rel='stylesheet' href='http://nvd3.org/src/nv.d3.css'> | |
| <script src='http://ajax.googleapis.com/ajax/libs/jquery/1.8.2/jquery.min.js' type='text/javascript'></script> | |
| <script src='http://d3js.org/d3.v3.min.js' type='text/javascript'></script> | |
| <script src='http://timelyportfolio.github.io/rCharts_nvd3_tests/libraries/widgets/nvd3/js/nv.d3.min-new.js' type='text/javascript'></script> | |
| <script src='http://nvd3.org/lib/fisheye.js' type='text/javascript'></script> |
OlderNewer