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| Aloe plicatilis (L.) Mill. | |
| Arisaema thunbergii subsp. autumnale J.C. Wang, J. Murata & Ohashi | |
| Begonia austrotaiwanensis Y.K. Chen & C.I. Peng | |
| Berberis mingetsensis Hayata | |
| Boehmeria nivea var. tenacissima (Gaudich.) Miq. | |
| Brachypodium sylvaticum (Huds.) P. Beauv. | |
| Bromus carinatus Hook. & Arn. | |
| Bulbophyllum confragosum Lin & Chang | |
| Callicarpa japonica Thunb. | |
| Clematis tsugetorum Ohwi |
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| library(request) | |
| library(rvest) | |
| library(urltools) | |
| library(dplyr) | |
| library(data.table) | |
| setwd('/Volumes/GoogleDrive/My Drive/生資系系務/系所評鑑資料/參考資料/analysis/系所評鑑分析/') | |
| grepSyllabusURL <- function(year, term, lecturer){ | |
| httr::set_config(httr::user_agent("Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_6) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/13.0.3 Safari/605.1.15")) |
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| library(data.table) | |
| # shell, split file by empty lines | |
| system('mkdir workspace') | |
| system('cd workspace; split -p "^$" ../1098.txt') | |
| files <- list.files('./workspace', pattern = '^x', full.names = TRUE) | |
| n <- floor(length(files)/5) | |
| for ( i in 0:(n-1) ){ |
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| library(raster) | |
| library(rgdal) | |
| rasterFiles <- list.files('../temp/', pattern = '.tif', | |
| full.names = TRUE) | |
| rs <- raster::stack(rasterFiles) | |
| # calculate warmth index | |
| # 1. create an empty raster layer and fill it with zero | |
| wi <- rs[[1, ]]*0 |
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| --- | |
| title: "Untitled" | |
| author: "your name" | |
| date: "3/27/2019" | |
| header-includes: | |
| - \usepackage{fontspec} | |
| - \usepackage{xeCJK} | |
| - \setCJKmainfont{Songti TC} # change to your font names | |
| output: | |
| pdf_document: |
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| # load rvest package | |
| library(rvest) | |
| prefix <- 'http://www.ncyu.edu.tw' | |
| acaLawPage <- 'http://www.ncyu.edu.tw/academic/law_list.aspx?pages=' | |
| totalPageCount <- paste(acaLawPage, 0, sep = "") %>% | |
| read_html() %>% # use read_html to read out URL | |
| html_nodes(xpath = '//span[@id="pagecount"]') %>% # find the path of pagecount | |
| html_text() %>% # convert it into plain text |
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| library(rvest) | |
| library(curl) | |
| prefix <- 'http://www.ncyu.edu.tw' | |
| acaLawPage <- 'http://www.ncyu.edu.tw/academic/law_list.aspx?pages=' | |
| acaLawPage1 <- read_html('http://www.ncyu.edu.tw/academic/law_list.aspx?pages=0') | |
| # get page counts | |
| totalPages <- acaLawPage1 %>% html_nodes(xpath = '//span[@id="pagecount"]') %>% |
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| plot | species | individuals | |
|---|---|---|---|
| DG01 | 印度牛膝 | 5 | |
| DG01 | 大花咸豐草 | 15 | |
| DG01 | 烏面馬 | 1 | |
| DG01 | 短穎馬唐 | 2 | |
| DG01 | 綠珊瑚 | 1 | |
| DG01 | 酢漿草 | 10 | |
| DG01 | 野莧菜 | 3 | |
| DG01 | 銀合歡 | 20 | |
| DG01 | 馬櫻丹 | 12 |
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| mothurDir <- '~/Downloads/mothur/' | |
| fastaFile <- './1060501B_cut3_without_N.fas' | |
| phylipFile <- paste(strsplit(fastaFile, '.fas')[1], '.phylip.dist', sep='') | |
| listFile <- paste(strsplit(fastaFile, '.fas')[1], '.phylip.fn.list', sep='') | |
| mothur(mothurDir, subfunc='dist.seqs', | |
| fasta=fastaFile, calc='onegap', cutoff=0.03, countends=F, output='lt') | |
| mothur(mothurDir, subfunc='cluster', | |
| phylip=phylipFile, |
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| #!/usr/bin/env sh | |
| calcWI_tmp() { | |
| for (( i=1; i<=12; i++ )) | |
| do | |
| if [ ${i} -lt 10 ] ; then | |
| num=0${i} | |
| else | |
| num=${i} | |
| fi | |
| gdal_calc.py --format=GTiff --overwrite -A tif/tavg${num}.tif --NoDataValue=-9999 \ |