Matias Piipari mz2
mz2
/ noyes_parser.rb
Created
January 14, 2010 17:49
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| module WMC | |
| # NoyesParser parses motif files with a header line and | |
| # column lines with symbols in the DNA alphabet in order A,C,G,T | |
| class NoyesParser | |
| attr_accessor :motifset | |
| attr_accessor :nukelinepattern | |
| attr_accessor :namepattern | |
| attr_accessor :normalize | |
mz2
/ NSArray+UniqueObjects.m
Created
March 21, 2010 23:10
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| #import "NSArray+UniqueObjects.h" | |
| @implementation NSArray (UniqueObjects) | |
| -(NSArray*) uniqueObjects { | |
| NSSet *set = [[NSSet alloc] initWithArray: self]; | |
| NSArray *vals = [set allObjects]; | |
| [set release]; | |
| return vals; |
mz2
/ NSArray+UniqueObjects.h
Created
March 21, 2010 23:12
NSArray+UniqueObjects.h: get unique objects from an NSArray, whilst maintaining sort ordering
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| #import <Foundation/Foundation.h> | |
| @interface NSArray (UniqueObjects) | |
| -(NSArray*) uniqueObjects; | |
| -(NSArray*) uniqueObjectsSortedUsingSelector: (SEL)comparator; | |
| -(NSArray*) uniqueObjectsSortedUsingFunction: (NSInteger (*)(id, id, void *)) comparator |
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| Undocumented S4 methods: | |
| generic '$' and siglist '_p_PEER__cEpsNodeSparse' | |
| generic '$' and siglist '_p_PEER__cSPARSEFA' | |
| generic '$' and siglist '_p_PEER__cWNodeSparse' | |
| generic '$<-' and siglist '_p_PEER__cWNodeSparse' | |
| generic '[' and siglist 'ExternalReference' | |
| generic '[<-' and siglist 'ExternalReference' | |
| generic '[[<-' and siglist '_p_PEER__cWNodeSparse,character' | |
| generic 'length' and siglist 'SWIGArray' |
mz2
/ NSString+Levenshtein.h
Created
July 28, 2013 19:01
— forked from iloveitaly/NSString+Levenshtein.h
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| // | |
| // NSString+Levenshtein.h | |
| // PyHelp | |
| // | |
| // Modified by Michael Bianco on 12/2/11. | |
| // <http://mabblog.com> | |
| // | |
| // Created by Rick Bourner on Sat Aug 09 2003. | |
| // rick@bourner.com |
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| before_script: | |
| - git submodule update --init --recursive | |
| cache: | |
| key: ${CI_BUILD_REF_NAME} | |
| paths: | |
| - .build | |
| build: | |
| script: |
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| # adapted from https://github.com/swiftdocker/docker-swift | |
| # once docker-swift supports setting the swift version via a build-arg we could pull from there instead | |
| FROM ubuntu:14.04 | |
| ENV SWIFT_BRANCH swift-3.0.2-release | |
| ENV SWIFT_VERSION 3.0.2 | |
| ENV SWIFT_URL https://swift.org/builds/swift-3.0.2-release/ubuntu1404/swift-3.0.2-RELEASE/swift-3.0.2-RELEASE-ubuntu14.04.tar.gz | |
| ENV SWIFT_SIG_URL https://swift.org/builds/swift-3.0.2-release/ubuntu1404/swift-3.0.2-RELEASE/swift-3.0.2-RELEASE-ubuntu14.04.tar.gz.sig | |
| ENV SWIFT_PLATFORM ubuntu14.04 |
mz2
/ run-docker
Created
March 27, 2017 12:01
Example script that can be used to execute a Vapor app inside Docker connected to the Xcode console
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| #!/bin/bash | |
| # $PATH tweak done so this also runs from Xcode. | |
| PATH="/usr/local/bin:${PATH}" | |
| ./kill-docker | |
| docker run --rm -it -v $PWD:/vapor -p 5432 -p 8080:8080 \ | |
| -e HOST_IP=$(ifconfig | grep -Eo 'inet (addr:)?([0-9]*\.){3}[0-9]*' | grep -Eo '([0-9]*\.){3}[0-9]*' | grep -v '127.0.0.1') \ | |
| manuscript-annotations |
mz2
/ kill-docker
Created
March 27, 2017 12:05
An example script that kills previous instance(s) of a docker container with name "manuscript-annotations"
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| #!/bin/bash | |
| # $PATH tweak done so this also runs from Xcode. | |
| PATH="/usr/local/bin:${PATH}" | |
| if [[ $(docker ps -q --filter=ancestor=manuscript-annotations) ]]; then | |
| docker stop $(docker ps -q --filter=ancestor=manuscript-annotations) | |
| fi |
mz2
/ gist:a70694d7f260b46013055bf8b1380e9e
Created
March 27, 2017 13:13
Example Dockerfile for Heroku deployment
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| # adapted from https://github.com/swiftdocker/docker-swift | |
| # once docker-swift supports setting the swift version via a build-arg we could pull from there instead | |
| FROM ubuntu:14.04 | |
| ENV SWIFT_BRANCH swift-3.0.2-release | |
| ENV SWIFT_VERSION 3.0.2 | |
| ENV SWIFT_URL https://swift.org/builds/swift-3.0.2-release/ubuntu1404/swift-3.0.2-RELEASE/swift-3.0.2-RELEASE-ubuntu14.04.tar.gz | |
| ENV SWIFT_SIG_URL https://swift.org/builds/swift-3.0.2-release/ubuntu1404/swift-3.0.2-RELEASE/swift-3.0.2-RELEASE-ubuntu14.04.tar.gz.sig | |
| ENV SWIFT_PLATFORM ubuntu14.04 |
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