neuralvis

#[no_uv];

extern mod native;

#[start]
fn start(argc: int, argv: **u8) -> int {
    do native::start(argc, argv) {
        main();
    }
}

neuralvis

function createTextureFromData ( width, height, data ) {
        if (!gl.getExtension("OES_texture_float")) {
           throw("Requires OES_texture_float extension");
        }
        texture = new THREE.Texture( );
        texture.needsUpdate = false;
        texture.__webglTexture = gl.createTexture();

        gl.bindTexture( gl.TEXTURE_2D, texture.__webglTexture );

neuralvis

The range sliders at the top change the values for the force-directed algorithm and the buttons load new graphs and apply various techniques. This will hopefully serve as a tool for teaching network analysis and visualization principles during my Gephi courses and general Networks in the Humanities presentations.

Notice this includes a pretty straightforward way to load CSV node and edge lists as exported from Gephi.

It also includes a pathfinding algorithm built for the standard data structure of force-directed networks in D3. This requires the addition of .id attributes for the nodes, however.

Now with Clustering Coefficients!

Also, it loads images for nodes but the images are not in the gist. The code also refers to different network types but the data files on Gist only refer to the transportation network.

neuralvis

vips im_tiff2vips CancerImage.tif:0 ~/test.png

#creating a tiff
vips im_vips2tiff view1.png test-image.tif:deflate,tile:256x256,pyramid

neuralvis

#!/bin/sh
# @ account_no = xxxx
# @ error = $(job_name).$(jobid).outerr
# @ output = $(job_name).$(jobid).out
# @ job_name = paraview
# @ wall_clock_limit = 1:00:00
# @ environment = COPY_ALL
# @ job_type = parallel
# @ node = 4
# @ tasks_per_node = 4

neuralvis

    function toArrayBuffer(buffer) {
        var ab = new ArrayBuffer(buffer.length);
        var view = new Uint8Array(ab);
        for (var i = 0; i < buffer.length; ++i) {
            view[i] = buffer[i];
        }
        return ab;
    }

neuralvis

if (Meteor.is_client) {

  Meteor.startup(function(){

    Session.set('first', 1);
    Session.set('last', 'Srinivasan');

    var fragment = Meteor.ui.render(function (){
      return Template.hello({
                              first: Session.get('first'), 

neuralvis

if (Meteor.is_client) {

  Meteor.startup(function(){

    Session.set('first', 1);
    Session.set('last', 'Srinivasan');

    var fragment = Meteor.ui.render(function (){
      return Template.hello({
                              first: Session.get('first'), 

neuralvis

meteor create --example leaderboard
meteor bundle myapp.tgz
tar xzf myapp.tgz
cd bundle
  (create package json with settings below)
jitsu databases create mongo <dbname>
  (grab dbstring)
jitsu env set PORT 3000
jitsu env set MONGO_URL <dbstring> 
jitsu deploy

neuralvis

meteor create --example todos
meteor bundle myapp.tgz
tar xzf myapp.tgz
cd bundle
  (create package json with settings below)
jitsu databases create mongo <dbname>
  (grab dbstring)
jitsu env set PORT 3000
jitsu env set MONGO_URL <dbstring> 
jitsu deploy