Nick Crawford ngcrawford

Computational Biologist. Recent work is currently in private repos.

ngcrawford / base_percentages_from_bam.py

Last active December 24, 2015 12:19

Simple script to calculate base percentages from a BAM file.

	import pysam
	import argparse
	from collections import Counter

	def get_args():
	"""Parse sys.argv"""
	parser = argparse.ArgumentParser()

	parser.add_argument('--bam',
	required=True,

ngcrawford / .vimrc

Created July 24, 2014 17:34

	"""""""""""""""""VIMRC"""""""""""""""
	""" Nick Crawford (mod from Ben Pote)
	"""Last updated 5.28.14
	"""""""""""""""""""""""""""""""""""""

	""""""Vundle!

	set nocompatible " be iMproved, required
	filetype off " required