nhoffman

#!/bin/sh

# Converts a mysqldump file into a Sqlite 3 compatible file. It also extracts the MySQL `KEY xxxxx` from the
# CREATE block and create them in separate commands _after_ all the INSERTs.

# Awk is choosen because it's fast and portable. You can use gawk, original awk or even the lightning fast mawk.
# The mysqldump file is traversed only once.

# Usage: $ ./mysql2sqlite mysqldump-opts db-name | sqlite3 database.sqlite
# Example: $ ./mysql2sqlite --no-data -u root -pMySecretPassWord myDbase | sqlite3 database.sqlite

nhoffman

#!/usr/bin/python2.7
"""

Performs a web BLAST query against NR using DNA sequences read from a fasta
file, storing the results in a SQLite database.

Dependencies: BioPython
    BioPython may be installed using the Python package index:
    $ sudo easy_install -f http://biopython.org/DIST/ biopython