Nicky Nicolson nickynicolson

bash

Default behaviour

history shows numbered command history, most recent last
!n retrieves command number n and executes it
!n:p retrieves command number n and places it into the command history without executing it. Up arrow then retrieves the command for editing

shopt

Linking Obsidian and Zotero

Setup

Zotero

Zotero desktop used to manage literature references, with zotfile and zotero better bibtex plugins used to manage PDF attachments and create / maintain biblatex format downloads respectively.

Obsidian

Obsidian used to manage notes and tasks, with the citations plugin used to access literature references from the Zotero biblatex format export.

Set up a dask gateway and print the dashboard URL

import dask_gateway

cluster = dask_gateway.GatewayCluster()
client = cluster.get_client()
cluster.scale(8)
print(cluster.dashboard_link)

Problem

Solution

Outline proposed solution for each problem

Unique value proposition

About

This gist shows you how to use langchain to reformat text input data (representing specimens) into a structured output defined by a python class. For ease of use, it uses the groq API, so that no local installation of an LLM is required.

Requirements

You'll need python and to install the langchain-groq package, which is specified in requirements.txt

You'll also need to sign up for a groq API key at https://console.groq.com/keys, and you'll need to store this key in an environment variable (GROQ_API_KEY) on your local system.

	import pandas as pd
	from pandas.io.json import json_normalize
	import requests
	# IH API documented here: https://github.com/nybgvh/IH-API/wiki
	url='http://sweetgum.nybg.org/science/api/v1/institutions'

	def main():
	response = requests.get(url)
	results = response.json()
	# The JSON format record for an IH record has nested sections - the

	import networkx as nx
	import numpy as np
	import matplotlib as mpl
	import matplotlib.pyplot as plt
	import mplleaflet
	import sys

	def main():
	inputfile=sys.argv[1]
	outputfile_base=sys.argv[2]

	javascript: Promise.all([import('https://unpkg.com/[email protected]?module'), import('https://unpkg.com/@tehshrike/[email protected]'), ]).then(async ([{
	default: Turndown
	}, {
	default: Readability
	}]) => {

	/* Optional vault name */
	const vault = "";

	/* Optional folder name such as "Clippings/" */