normanrz

### define 
jquery : $
underscore : _
###

# `DispatchedWorker` is a wrapper around the WebWorker API. First you
# initialize it providing url of the javascript worker code. Afterwards
# you can request work using `send` and wait for the result using the
# returned deferred.
class DispatchedWorker

normanrz

echo "               "
echo " _____ _____ _____ "
echo "|   __|     |     |"
echo "|__   |   --| | | |"
echo "|_____|_____|_|_|_|"
echo " webKnossos installer "

command -v brew >/dev/null 2>&1 || { 
	echo ""
	echo "~~~~ Installing homebrew ~~~~"

normanrz

Keybase proof

I hereby claim:

• I am normanrz on github.
• I am normanrz (https://keybase.io/normanrz) on keybase.
• I have a public key whose fingerprint is 4F3A 76C6 2FA5 7A05 736E E030 45E1 4CC0 D31E 1552

To claim this, I am signing this object:

normanrz

#!/bin/bash
set -e

curl -fsSL https://download.docker.com/linux/ubuntu/gpg | apt-key add -
echo "deb [arch=amd64] https://download.docker.com/linux/ubuntu $(lsb_release -cs) stable" > /etc/apt/sources.list.d/docker.list
apt-get update
apt-get install -y docker-ce docker-ce-cli containerd.io

curl -L "https://github.com/docker/compose/releases/download/1.25.4/docker-compose-$(uname -s)-$(uname -m)" -o /usr/local/bin/docker-compose
chmod +x /usr/local/bin/docker-compose

normanrz

Individual Contributor License Agreement

Thank you for your interest in making a Contribution to a project of scalable minds GmbH, a German company with notice address at Großbeerenstraße 15, 14482 Potsdam, Germany (scalable minds or we). In order to clarify the intellectual property license granted with Contributions from any person or entity, scalable minds must have a Contributor License Agreement (CLA) on file that has been signed by each Contributor, indicating agreement to the license terms below. This license is for your protection as a Contributor as well as the protection of scalable minds and its users; it does not change your rights to use your own Contributions for any other purpose. You accept and agree to the following terms and conditions for your present and future Contributions submitted to scalable minds.

Definitions:

You (or Your) shall mean the copyright owner or legal entity authorized by the copyright owner that is making this CLA with scalable minds. For legal entiti

normanrz

#!/usr/bin/python
from argparse import ArgumentParser, REMAINDER
from subprocess import check_output, call
from threading import Thread
from time import sleep
import os
import re

POLL_INTERVAL=2

normanrz

#!/bin/bash
set -e

# wget https://gist.github.com/normanrz/503ac852159f578975719563bfb91b06/raw/0769184fc82298496faa0206a6162eac21d6354e/bootstrap.sh | sh -

DOCKER_COMPOSE_VERSION=2.2.3
ANACONDA_VERSION=2021.11

# Docker
curl -fsSL https://download.docker.com/linux/ubuntu/gpg | apt-key add -

normanrz

# VOLUME ANNOTATION MERGE
#
# This script merges multiple volume annotations from webKnossos.
# In case of overlapping annotations, the last annotation wins.
#
# The --relabel flag will relabel the segments of each annotation
# to be unique in the output annotation. Useful when multiple
# annotators created segments with id 1.
#
# 1. Download all annotations that you want to merge.

normanrz

# APPLY VOLUME MERGE ANNOTATION
#
# This script applies a webKnossos merger mode annotation
# to a given segmentation layer. The script will output a
# WKW layer.
#
# The --set_zero flag will relabel all non-annotated segments
# to 0.
#
# 1. Download the merger mode NML file.

normanrz

# APPLY VOLUME MERGE ANNOTATION
#
# This script applies a webKnossos merger mode annotation
# to a given segmentation layer. The script will output a
# TIFF image sequence.
#
# The --set_zero flag will relabel all non-annotated segments
# to 0.
#
# 1. Download the merger mode NML file.