Skip to content

Instantly share code, notes, and snippets.

View npicciani's full-sized avatar

Natasha Picciani npicciani

1 follower · 2 following
View GitHub Profile
@npicciani
npicciani / snakemake.md
Last active November 2, 2023 18:12
Snakemake cheat sheet

Snakemake cheat sheet (coupled with github)

You can find the documentation here.

Installing snakemake on Farnam

You can easily install snakemake on Farnam with mamba:

module load miniconda
@npicciani
npicciani / singlecell.md
Last active August 23, 2021 19:22
Essential resources for getting started with analysis of single cell data sets

Created by Natasha Picciani and Jasmine Mah

Getting Started with Single Cell Analysis

Plan for Tuesday (08/24):

Goals

Our goal on Tuesday is to go over the introductory tutorial for single cell RNA-seq analysis using an R package called Seurat and understand the point of each step.

@npicciani
npicciani / RStudio-Conda.md
Last active March 16, 2022 20:59
How to use a Conda environment in RStudio

Loading RStudio from a Conda environment

I wanted to load a conda environment for working in RStudio and keep all my packages for a particular project separated from my base environment.

So I peeked on instructions here:

https://alexanderlabwhoi.github.io/post/anaconda-r-sarah/

I created a conda environment with the latest r-version and essential packages by typing: