npicciani

Loading RStudio from a Conda environment

I wanted to load a conda environment for working in RStudio and keep all my packages for a particular project separated from my base environment.

So I peeked on instructions here:

https://alexanderlabwhoi.github.io/post/anaconda-r-sarah/

I created a conda environment with the latest r-version and essential packages by typing:

npicciani

Created by Natasha Picciani and Jasmine Mah

Getting Started with Single Cell Analysis

Plan for Tuesday (08/24):

Goals

Our goal on Tuesday is to go over the introductory tutorial for single cell RNA-seq analysis using an R package called Seurat and understand the point of each step.

npicciani

Snakemake cheat sheet (coupled with github)

You can find the documentation here.

Installing snakemake on Farnam

You can easily install snakemake on Farnam with mamba:

module load miniconda