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@lukauskas
lukauskas / parse_sbml_stoichiometry.py
Last active June 7, 2021 04:12
Parse SBML stoichiometry matrix
from __future__ import print_function
import libsbml
import argparse
def _parser():
parser = argparse.ArgumentParser(description="Parse stoichiometry matrix of SBML file")
parser.add_argument('file', metavar="filename", type=argparse.FileType('r'),
help="Filename of SBML file to parse")
@miebach
miebach / git-log-pretty
Last active December 13, 2024 16:26
pretty git log graph with coloured branches
# Visualizing branch topology in git on the commandline
git log --graph --oneline --full-history --all
git log --graph --full-history --all --pretty=format:"%h%x09%d%x20%s"
# With colors in Bash:
git log --graph --full-history --all --color --pretty=format:"%x1b[31m%h%x09%x1b[32m%d%x1b[0m%x20%s"
@js1972
js1972 / write_file.groovy
Created May 16, 2014 07:42
How to write content to a new file (overwrite if already existing) in Groovy.
//
// Write the mock request payload to a file for checking later...
// newWrite() is the important it to ensure you get a *new* file each time.
//
def filename = "C:\\MyScratchFolder\\soapUI projects\\Testing\\procon\\mock_po_activity_request.xml"
def file = new File(filename)
def w = file.newWriter()
w << mockRequest.requestContent
w.close()
@hartleybrody
hartleybrody / Javascript Variable Scoping.md
Last active February 3, 2019 19:13
Variable scoping in Javascript can be confusing so I set out to make notes of the basic rules so that I can reference them later. Hope these are useful to others, happy to talk pull requests for corrections.

Javascript has two kinds of scope:

  1. Local (inside a function)
  2. Global (outside a function)

The var Keyword

  • Using the var keywords creates the variable in the current scope
    • If the current scope is global, then var is unnecessary (see below)
    • If the current scope is local, then you’re creating a local variable in the current scope
  • If you don’t use var, then Javascript goes up the “scope chain” to see if it’s already been declared
@mobilemind
mobilemind / git-tag-delete-local-and-remote.sh
Last active March 31, 2025 09:20
how to delete a git tag locally and remote
# delete local tag '12345'
git tag -d 12345
# delete remote tag '12345' (eg, GitHub version too)
git push origin :refs/tags/12345
# alternative approach
git push --delete origin tagName
git tag -d tagName
@jbub
jbub / squash-commits.sh
Created June 12, 2013 15:31
git squash last two commits into one
git rebase --interactive HEAD~2
# we are going to squash c into b
pick b76d157 b
pick a931ac7 c
# squash c into b
pick b76d157 b
s a931ac7 c
@willurd
willurd / web-servers.md
Last active March 26, 2025 19:51
Big list of http static server one-liners

Each of these commands will run an ad hoc http static server in your current (or specified) directory, available at http://localhost:8000. Use this power wisely.

Discussion on reddit.

Python 2.x

$ python -m SimpleHTTPServer 8000
@aeischeid
aeischeid / ErrorController.groovy
Last active May 28, 2019 16:08
Alternate grails controller template and url mapping for adding a scaffolded JSON API
package gvl
import grails.converters.JSON
class ErrorController {
// Forbidden
def error403() {
withFormat {
html { render(view: 'error403') }
@olivierobert
olivierobert / CI Detect Ajax
Created November 22, 2012 09:26
Code Igniter // Detect and return AJAX / JSON response
/** Within the controller method **/
// If this is an ajax request, then return a JSON string
if ( $this->input->is_ajax_request() ):
$this->output->set_content_type('application/json');
$this->output->set_output( json_encode($data) );
endif;
anonymous
anonymous / gist:3910584
Created October 18, 2012 09:08
import java.io.BufferedReader;
import java.io.File;
import java.io.FileReader;
import java.util.Date;
import java.util.HashMap;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;